Time for a thread!🧵 How different is the molecular organization of thylakoids in “higher” plants🌱? To find out, we teamed up with @profmattjohnson.bsky.social to dive into spinach chloroplasts with #CryoET ❄️🔬. Curious? ..Read on! #TeamTomo #PlantScience 🧪 🧶🧬 🌾 elifesciences.org/articles/105... 1/🧵
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Contrary to previous models, our native views showed that grana are not perfect cylinders, but have wavy undulating edges 🌊🏄♀️. Here we slice through a few grana🥞 from the top– Do you see all the little protein densities in the membranes?🔍 Those are photosynthetic complexes. How to analyze them? 5/🧵
The talented @lorenzlamm.bsky.social (joint PhD w/ @tingyingpeng.bsky.social) developed #MemBrain 🤖🧠software to automatically segment the thylakoid membranes and localize all the photosystem II (PSII) complexes embedded within them. Let’s get analyzing!👨💻🤓 Try MemBrain: bsky.app/profile/lore... 6/🧵
🦠🧠 MemBrain update! 🧠🦠 We’ve updated our preprint! It now covers the full MemBrain v2 pipeline for end-to-end membrane analysis in #CryoET: segmentation, particle picking, and spatial statistics. 🔗 Preprint: doi.org/10.1101/2024... 🔗 Code: github.com/CellArchLab/... 🧵(1/6) #TeamTomo
But there’s a curious loose end to this story. Scientists have been looking at PSII organization in thylakoids for over 50 years (including some really stunning freeze fracture 🔬😍). Sometimes PSII looks randomly oriented, and other times it forms extended 2D crystalline arrays in the membrane 💠 9/🧵
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So, PSII arrays seem to be an artifact of isolating thylakoid membranes. And yet… We still wonder if these beautiful (and likely more static) structures play some physiological role during stress or damage. @wojwie.bsky.social & I wrote a mini-review on this: academic.oup.com/plcell/artic... 12/🧵
This study completes a trilogy of thylakoid papers in @elife.bsky.social, one every 5 years⏳⌛ Part 1 was my first #CryoET paper: elifesciences.org/articles/04889 Part 2 was my first paper with @wojwie.bsky.social: elifesciences.org/articles/53740 Time flies... so let's start working on Part 4? 🤓🧪