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github.com/noamteyssier... Massive refactor of paraseq to remove a lot of duplication (and macros). From 3400 loc before, to 2300 loc after :)
github.com[WIP] inline reading into worker threads and split paired-end reading by RagnarGrootKoerkamp · Pull Request #39 · noamteyssier/paraseqThis has a few commits, mostly as proof-of-concept for now.
Before, processing .fastq.gz files in deacon goes to ~500% CPU, while after, it goes to ~600% CPU (I only have 6 cores, but I expect over...
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