Nils Homer on Mythryl: “minibwa + ALTs: github.com/nh13/minibwa... In-mapper ALT-aware MAPQ…”

minibwa + ALTs: github.com/nh13/minibwa... In-mapper ALT-aware MAPQ recovery via DRAGEN-style liftover groups. No bwa-postalt.js. Matches bwa+postalt, byte-identical without a .alt file. Works how I want it to. The real test will be when others give it a try. No warranty, implied or otherwise.

github.comALT-aware mapping via post-extension liftover groups by nh13 · Pull Request #7 · nh13/minibwaALT-aware mapping via post-extension liftover groups Draft for design feedback, opened against this fork's master. It adds optional ALT-contig awareness: given a .alt file, reads whose confiden...

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28/6/26, 4:11 am0 reposts3 likes

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