Post

New Experimental Google Colab Notebook now integrates AlphaFold3 with OpenFold3 and py2Dmol: colab.research.google.com/github/sokry... (1/3)

15/6/26, 2:11 pm15 reposts55 likes

Sergey Ovchinnikov

@sokrypton.org

15 June

To get OpenFold3 (pytorch weights) working in AlphaFold3 (jax code base) was not super easy. Required an entire weekend and $40 of Claude Code credit. See breakdown of what had to change in AF3 code base to get OF3 weights to work: github.com/sokrypton/al... Commit: github.com/sokrypton/al... (2/3)

Sergey Ovchinnikov

@sokrypton.org

15 June

Finally, the code for anyone wanting to run alphafold3 locally with openfold3 weights (including convert script) can be found here: github.com/sokrypton/al...

github.comGitHub - sokrypton/alphafold3: AlphaFold 3 inference pipeline.AlphaFold 3 inference pipeline. Contribute to sokrypton/alphafold3 development by creating an account on GitHub.