Thomas Yeo

Thomas Yeo

@bttyeo.bsky.social

Brain imaging, machine learning, neuroscience, mental disorders https://sites.google.com/view/yeolab

4K followers349 following234 posts

A video of a patient who responded well to personalized TMS: www.temasekreview.com.sg/community-st...

temasekreview.com.sgtemasekreview.com.sg
Thomas Yeo@bttyeo.bsky.social

Our TMS algorithm is now published in @imagingneurosci.bsky.social doi.org/10.1162/IMAG... If you are coming to @ohbmofficial.bsky.social @ohbmtrainees.bsky.social, come check out our poster about our open label trial. Poster number 1152 Monday, Jun 15 | 14:45-15:45 Tuesday, Jun 16 | 13:30-14:30

Excited that Imaging Neuroscience has gotten its impact factor. Note that the impact factor is artificially low for the first year of any journal (because of the way it is calculated), so we expect the impact factor to improve next year. See more statistics below

Imaging Neuroscience@imagingneurosci.bsky.social

A note on first IF for new journals: IF is based on citations in year 3 of papers published in years 1 and 2. As papers from year 1 have longer to accrue citations, the smaller launch-year output reduces the first combined calculation. This effect disappears the following year.

Thomas Yeo reposted

Our first Impact Factor is 3.0 โ€” an important milestone for a new journal. As with most new journals, the first IF is affected by the smaller publication volume in the launch year. Latest citation data are encouraging, and the journalโ€™s IF is set to rise in 2027.

For those at @ohbmofficial.bsky.social @ohbmtrainees.bsky.social come check out our poster on using deep learning to accelerate biophysical model fitting & resulting insights into lifespan changes in E/I ratio! Poster number 2304 Wed, June 17 | 13:45-14:45 Thurs, June 18 | 14:45-15:45

Thomas Yeo@bttyeo.bsky.social

Updated preprint: doi.org/10.1101/2025... We have improved DELSSOME and showed that we can accelerate the estimation of two new biophysical models. By collating 12,005 individuals, we derive normative trajectories of cortical E/I ratio across the lifespan ...

Thomas Yeo reposted

Replying to @wakeupwoke.bsky.social

One interpretation: baseline salience FC reflects the attractor basin characteristics of that network or how reliably it settles into coherent functional states. Low FC = shallow, poorly defined basins. The network can get there, but with more variability and less precision.

Thomas Yeo reposted

Attending #OHBM2026.๐Ÿ‡ซ๐Ÿ‡ท? You will not want to miss Monday morning's keynote by Nanthia Suthana (chaired by yours truly ๐Ÿ˜Š). I can't wait!!

๐Ÿ”ฆ Nanthia Suthana, Ph.D. ๐ŸŽค Mapping the Human Brain in Naturalistic Environments ๐Ÿง  Using intracranial recordings, EEG, wearables, eye-tracking, and VR/AR, Dr. Suthana studies memory, navigation, and emotion during real-world behavior. ๐Ÿ”— Learn more: tinyurl.com/ynzhsxvy

Congrats to @shellakeilholz.bsky.social and thank you to the amazing leadership by our outgoing EIC @fmrib-steve.bsky.social Hope the community can continue to support the journal to bring imaging neuroscience to new heights!

Imaging Neuroscience@imagingneurosci.bsky.social

We are delighted to announce that Shella Keilholz will shortly become the Editor-in-Chief of Imaging Neuroscience, following the selection process described in our Author Guide. Steve Smith is stepping down as EiC after serving for three years, following the transition from NeuroImage.

This slide was particularly popular. Never had so many people cheering one of my slides before. haha

Thomas Yeo@bttyeo.bsky.social

For those who are attending @ohbmofficial.bsky.social brainhack, I will be giving a short presentation of this work at the neuroimaging statistics workshop, co-hosted with brainhack: sites.google.com/view/nsw2026

It was great fun giving the talk at the neuroimaging statistics workshop. Happy to share the slides here: www.dropbox.com/scl/fi/8riom... Hopefully, the talk was pitched at a level that was understandable to non-statisticians!

dropbox.comDropbox
Thomas Yeo@bttyeo.bsky.social

In a meta-analysis of 210 biomedical AI studies that statistically compared models under cross-validation, 97% used invalid statistical tests. Here's our new preprint doi.org/10.64898/202... led by @tianchu.bsky.social @hetuli.bsky.social @shaoshiz.bsky.social @nichols.bsky.social 1/N

For those going to @OHBM @OHBM_Trainees you can check out our poster on spectral normative modeling! Poster Number: 1054 Monday, June 15, 14:45-15:45 Tuesday, June 16, 13:30-14:30 Our preprint has also been massively updated: doi.org/10.1101/2025...

Sina Mansour L.@sinamansourl.bsky.social

1/ Excited to share our latest preprint! ๐Ÿš€ We introduce Spectral Normative Modeling (SNM)โ€”a novel approach leveraging graph spectral methods to advance brain charting towards personalized precision medicine. ๐Ÿ”— www.medrxiv.org/content/10.1...

Thomas Yeo reposted

1/ Excited to share our latest preprint! ๐Ÿš€ We introduce Spectral Normative Modeling (SNM)โ€”a novel approach leveraging graph spectral methods to advance brain charting towards personalized precision medicine. ๐Ÿ”— www.medrxiv.org/content/10.1...

medrxiv.orgSpectral normative modeling of brain structureNormative modeling in neuroscience aims to characterize interindividual variation in brain phenotypes and thus establish reference ranges, or brain charts, against which individual brains can be compa...

I guess the stable architecture we found must be related to your SES findings? @ndosenbach.bsky.social @smarek0502.bsky.social

Thomas Yeo@bttyeo.bsky.social

Paper is now out in Nature Comms doi.org/10.1038/s414... If you are at @ohbmofficial.bsky.social @ohbmtrainees.bsky.social , come check out our poster about Simpsonโ€™s paradox in neurodevelopment. Poster number 998 Monday, June 15 | 14:45-15:45 Tuesday, June 16 | 13:30-14:30

I guess our results of a stable architecture can be explained by your recent SES results? @smarektj.bsky.social @ndosenbach.bsky.social

Thomas Yeo@bttyeo.bsky.social

Paper is now out in Nature Comms doi.org/10.1038/s414... If you are at @ohbmofficial.bsky.social @ohbmtrainees.bsky.social , come check out our poster about Simpsonโ€™s paradox in neurodevelopment. Poster number 998 Monday, June 15 | 14:45-15:45 Tuesday, June 16 | 13:30-14:30

Openly shared implementation of TMS targeting is still rare, so we are pleased to make ours freely available for research use: github.com/ThomasYeoLab... Let us know if you have any issue running it!

github.comGitHub - ThomasYeoLab/Kong2026_TMSTree: Tree-based MS-HBM TMS targeting algorithmTree-based MS-HBM TMS targeting algorithm. Contribute to ThomasYeoLab/Kong2026_TMSTree development by creating an account on GitHub.
Thomas Yeo@bttyeo.bsky.social

Our TMS algorithm is now published in @imagingneurosci.bsky.social doi.org/10.1162/IMAG... If you are coming to @ohbmofficial.bsky.social @ohbmtrainees.bsky.social, come check out our poster about our open label trial. Poster number 1152 Monday, Jun 15 | 14:45-15:45 Tuesday, Jun 16 | 13:30-14:30

Our TMS algorithm is now published in @imagingneurosci.bsky.social doi.org/10.1162/IMAG... If you are coming to @ohbmofficial.bsky.social @ohbmtrainees.bsky.social, come check out our poster about our open label trial. Poster number 1152 Monday, Jun 15 | 14:45-15:45 Tuesday, Jun 16 | 13:30-14:30

Thomas Yeo@bttyeo.bsky.social

We develop a new TMS targeting algorithm and test it in an open label trial in a treatment-resistant depression population with high comorbidities. Preprints by @rubykong92.bsky.social Phern-Chern Tor 1. doi.org/10.1101/2025... 2. doi.org/10.64898/202... Our new approach ...

If you are attending @ohbmofficial.bsky.social @ohbmofficial.bsky.social come by and check out our poster on how excessive censoring hurts parcellation and personalized TMS target accuracy. Poster number 2399 Presenting on Wednesday, June 17 (12:45-13:45) and Thursday, June 18 (13:45-14:45)

Thomas Yeo@bttyeo.bsky.social

Do you censor high motion frames in fMRI? In two preprints by @twktan.bsky.social @mandymejia.bsky.social, we find that we may be censoring too much! doi.org/10.64898/202... arxiv.org/html/2603.07... Strict censoring leads to worse personalized TMS targets than no censoring, even with high motion!

Thomas Yeo reposted

๐ŸŽ‰ Registration is now OPEN for the 2026 OHBM Australian Chapter Annual Meeting! ๐Ÿ‡ฆ๐Ÿ‡บ๐Ÿง ๐Ÿ‡ฆ๐Ÿ‡บ Get your ticket now! ๐ŸŽŸ๏ธ๐ŸŽŸ๏ธ๐ŸŽŸ๏ธ Registration: events.humanitix.com/ohbm-austral... ๐Ÿ“ Submit your abstract: docs.google.com/forms/d/e/1F... ๐Ÿ† Nominate a colleague (or yourself) for an award: ohbm-aus.github.io/awards/

events.humanitix.comOHBM Australia Meeting 2026Uniting the Australian human brain mapping community.

Thomas Yeo reposted

You're not going to want to miss this! More information on the Brainhack and other workshops here: ohbm.github.io/hackathon2026/

ohbm.github.ioOHBM Brainhack Bordeaux 2026 | June 11-13Join us in Bordeaux, France for OHBM Brainhack 2026, a 3-day collaborative event for building, learning, and connecting around open neuroimaging tools.
Thomas Yeo@bttyeo.bsky.social

For those who are attending @ohbmofficial.bsky.social brainhack, I will be giving a short presentation of this work at the neuroimaging statistics workshop, co-hosted with brainhack: sites.google.com/view/nsw2026

For those who are attending @ohbmofficial.bsky.social brainhack, I will be giving a short presentation of this work at the neuroimaging statistics workshop, co-hosted with brainhack: sites.google.com/view/nsw2026

sites.google.comNeuroStats2026
Thomas Yeo@bttyeo.bsky.social

In a meta-analysis of 210 biomedical AI studies that statistically compared models under cross-validation, 97% used invalid statistical tests. Here's our new preprint doi.org/10.64898/202... led by @tianchu.bsky.social @hetuli.bsky.social @shaoshiz.bsky.social @nichols.bsky.social 1/N

Here's bonus slides on cross-validation tests, separate from our preprint. Covering: 1. paired (sign-flip) permutation test 2. label-swap permutation test 3. sample-level vs fold-averaged stats 4. a common misapplication of the corrected t-test 5. three bootstrap variants 1/N

Thomas Yeo@bttyeo.bsky.social

In a meta-analysis of 210 biomedical AI studies that statistically compared models under cross-validation, 97% used invalid statistical tests. Here's our new preprint doi.org/10.64898/202... led by @tianchu.bsky.social @hetuli.bsky.social @shaoshiz.bsky.social @nichols.bsky.social 1/N

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Here's bonus slides on cross-validation tests, separate from our preprint. Covering: 1. paired (sign-flip) permutation test 2. label-swap permutation test 3. sample-level vs fold-averaged stats 4. a common misapplication of the corrected t-test 5. three bootstrap variants 1/N

Thomas Yeo@bttyeo.bsky.social

In a meta-analysis of 210 biomedical AI studies that statistically compared models under cross-validation, 97% used invalid statistical tests. Here's our new preprint doi.org/10.64898/202... led by @tianchu.bsky.social @hetuli.bsky.social @shaoshiz.bsky.social @nichols.bsky.social 1/N

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(5b) Bootstrap variant #2: bootstrap-ET. Run CV first โ†’ bootstrap the fold-level differences โ†’ apply empirical test (ET) of differences (CI from 2.5%/97.5% percentiles). Valid, but very low power โ€” trades sensitivity for robustness. Bootstrapping happens after CV. 6/N

(5c) Bootstrap variant #3: bootstrap-t. Same as bootstrap-ET, but applies t-test to bootstrapped samples. Bootstrapped samples aren't independent โ†’ t-test breaks โ†’ very high FPR. Bootstrap procedures vary widely in validity โ€” papers should describe theirs clearly. 7/7

Here's bonus slides on cross-validation tests, separate from our preprint. Covering: 1. paired (sign-flip) permutation test 2. label-swap permutation test 3. sample-level vs fold-averaged stats 4. a common misapplication of the corrected t-test 5. three bootstrap variants 1/N

Thomas Yeo@bttyeo.bsky.social

In a meta-analysis of 210 biomedical AI studies that statistically compared models under cross-validation, 97% used invalid statistical tests. Here's our new preprint doi.org/10.64898/202... led by @tianchu.bsky.social @hetuli.bsky.social @shaoshiz.bsky.social @nichols.bsky.social 1/N

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(4/5) A common error โ€” including in my own lab ๐Ÿ˜…. The corrected t-test is valid on fold-averaged stats. But if we average across folds within each repetition, the between-repetition correlation is much higher than the 1/K the test assumes, and it breaks. 4/N

(5a) Bootstrap variant #1: bootstrap-orig (Raschka 2018). Bootstrap before training โ€” sample with replacement, train on unique samples, test on the rest. Repeat to build a CI. Valid + moderate power. The key: bootstrapping happens before model training. 5/N

Here's bonus slides on cross-validation tests, separate from our preprint. Covering: 1. paired (sign-flip) permutation test 2. label-swap permutation test 3. sample-level vs fold-averaged stats 4. a common misapplication of the corrected t-test 5. three bootstrap variants 1/N

Thomas Yeo@bttyeo.bsky.social

In a meta-analysis of 210 biomedical AI studies that statistically compared models under cross-validation, 97% used invalid statistical tests. Here's our new preprint doi.org/10.64898/202... led by @tianchu.bsky.social @hetuli.bsky.social @shaoshiz.bsky.social @nichols.bsky.social 1/N

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(2/5) The label-shuffling permutation test is valid for "is prediction better than chance?" โ€” but invalid for model comparison. Why? Shuffling labels creates a no-signal scenario, which is the wrong null for comparing two models. Slides explain more. 3/N

(3/5) Sample-level vs fold-averaged statistics. Sample-level retains every test sample's stat (instead of 1 per fold). Within-fold correlations are even stronger than between-fold, so sample-level statistics inflate FPR even more. 3/N

Here's bonus slides on cross-validation tests, separate from our preprint. Covering: 1. paired (sign-flip) permutation test 2. label-swap permutation test 3. sample-level vs fold-averaged stats 4. a common misapplication of the corrected t-test 5. three bootstrap variants 1/N

Thomas Yeo@bttyeo.bsky.social

In a meta-analysis of 210 biomedical AI studies that statistically compared models under cross-validation, 97% used invalid statistical tests. Here's our new preprint doi.org/10.64898/202... led by @tianchu.bsky.social @hetuli.bsky.social @shaoshiz.bsky.social @nichols.bsky.social 1/N

(1/5) The paired (sign-flip) permutation test fails under cross-validation. The swap procedure assumes fold-averaged statistics are exchangeable under the null โ€” but they're positively correlated, not independent. The result: inflated FPR. Slide explains the mechanics. 2/N

Thomas Yeo reposted

Statistically crossvalidation folds are not independent. The number of papers treating them as if they were is off the charts.

Thomas Yeo@bttyeo.bsky.social

In a meta-analysis of 210 biomedical AI studies that statistically compared models under cross-validation, 97% used invalid statistical tests. Here's our new preprint doi.org/10.64898/202... led by @tianchu.bsky.social @hetuli.bsky.social @shaoshiz.bsky.social @nichols.bsky.social 1/N

Thomas Yeo reposted

For years, we've known that running a standard t-test on cross-validation folds violates sample independence. We wanted to see how widespread this issue actually is. The result? 97% of the studies used an invalid statistical test. ๐Ÿงต๐Ÿ‘‡

Thomas Yeo@bttyeo.bsky.social

In a meta-analysis of 210 biomedical AI studies that statistically compared models under cross-validation, 97% used invalid statistical tests. Here's our new preprint doi.org/10.64898/202... led by @tianchu.bsky.social @hetuli.bsky.social @shaoshiz.bsky.social @nichols.bsky.social 1/N

Thomas Yeo reposted

Replying to @bttyeo.bsky.social

Can't stress this enough ๐Ÿ‘‡ If you use ML to compare predictive models in your research (neuroscience, genetics, you name it), this paper is a must read! ๐Ÿ‘€ The majority of work in this space (mine included ๐Ÿ™‹) misses critical nuances when reporting comparative stats.

Thomas Yeo reposted

So glad this is finally public. Grateful to my wonderful co-authors for the long journey.

Thomas Yeo@bttyeo.bsky.social

In a meta-analysis of 210 biomedical AI studies that statistically compared models under cross-validation, 97% used invalid statistical tests. Here's our new preprint doi.org/10.64898/202... led by @tianchu.bsky.social @hetuli.bsky.social @shaoshiz.bsky.social @nichols.bsky.social 1/N