Lukasz Bugaj

Lukasz Bugaj

@bugajlab.bsky.social

Associate Professor @ Penn Bioengineering. Optogenetics, thermogenetics, synthetic biology, cancer cell signaling, cell stress, bio-tinkering. www.bugajlab.com

567 followers175 following103 posts

A bit late but…Tenured! Immense gratitude for those who got us here. Firstly the students/postdocs (too many to list!) who took a chance on an unproven lab and were unafraid to pursue some strange new ideas. I couldn't have predicted our path, and I couldn’t be more excited for what's next.

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A bit late but…Tenured! Immense gratitude for those who got us here. Firstly the students/postdocs (too many to list!) who took a chance on an unproven lab and were unafraid to pursue some strange new ideas. I couldn't have predicted our path, and I couldn’t be more excited for what's next.

Penn BE has been a fantastic place to launch a lab, with maximally supportive leadership(Chairs Dave Meaney and Ravi Radhakrishnan, and Dean Kumar, and world-class colleagues who doubled as close mentors, esp. Arjun Raj, Ken Zaret, Lewis Chodosh.

#CellSigSRC

Zikang (Dennis) Huang@dennishuang.bsky.social

Wanna know more about a photoreceptor that encodes a signal adaptation circuit in a single protein, its evolution, and how we engineer it into different info processing modes? Check out poster #26 (and flash talk!) on Tuesday at FASEB signaling!

Lukasz Bugaj reposted

Wanna know more about a photoreceptor that encodes a signal adaptation circuit in a single protein, its evolution, and how we engineer it into different info processing modes? Check out poster #26 (and flash talk!) on Tuesday at FASEB signaling!

Lukasz Bugaj@bugajlab.bsky.social

Highlights: Keynotes: Tobias Meyer and Jin Zhang Sessions on metabolism, development, stress, immune, cell cycle, optogenetics, image analysis Workshops on advanced microscopy, organoids Meet-the-experts: academia, industry, publishing Networking (+line dancing!) in Nashville Early reg. ends 5/10!

Highlights: Keynotes: Tobias Meyer and Jin Zhang Sessions on metabolism, development, stress, immune, cell cycle, optogenetics, image analysis Workshops on advanced microscopy, organoids Meet-the-experts: academia, industry, publishing Networking (+line dancing!) in Nashville Early reg. ends 5/10!

Abstracts are due this Sunday, April 26th! ⏰ Come present your latest work to a fantastic community of researchers interested in all aspects of how cell signal dynamics regulate biological function. events.faseb.org/event/Dynami...

events.faseb.orgAbstracts/Presentations - Dynamics and Encoding in Cell Signaling.Explore advances in cell communication, signaling, and imaging tech at this unique conference, bridging diverse molecular pathways and systems biology.
FASEB@faseborg.bsky.social

Encode the cell signals for this "dynamic" conference! Featuring keynotes Tobias Meyer of @weillcornell.bsky.social and @jinzhanglab.bsky.social, alongside organizers Mary Teruel, Eric Batchelor, @bugajlab.bsky.social, and Andrew Paek. Register and submit your abstract by April 26: buff.ly/YMRzst4

Abstracts due in 2 weeks for the Signal Dynamics FASEB! Many speaking slots will be filled from submitted abstracts events.faseb.org/event/Dynami...

events.faseb.orgAbstracts/Presentations - Dynamics and Encoding in Cell Signaling.Explore advances in cell communication, signaling, and imaging tech at this unique conference, bridging diverse molecular pathways and systems biology.
FASEB@faseborg.bsky.social

Encode the cell signals for this "dynamic" conference! Featuring keynotes Tobias Meyer of @weillcornell.bsky.social and @jinzhanglab.bsky.social, alongside organizers Mary Teruel, Eric Batchelor, @bugajlab.bsky.social, and Andrew Paek. Register and submit your abstract by April 26: buff.ly/YMRzst4

The Hughes lab @hugheslabpenn.bsky.social develops a robust optogenetic RET receptor and shows it can drive shape changes characteristic of kidney development. Will be exciting to see how opto can help us comprehend development of complex tissue structures

Alex Hughes Lab@hugheslabpenn.bsky.social

@lsprahl.bsky.social and Ronald Canlla in the lab just published a detailed study on remote-controlled epithelial budding morphogenesis. We can direct budding, tubule elongation, and perhaps branching in human kidney organoids via a light-activated RET receptor. www.biorxiv.org/content/10.6...

Abstract submission now open for the Signaling Dynamics FASEB in Nashville (6/21-25, 2026)! events.faseb.org/event/Dynami... Many speaking slots from submitted abstracts, with a focus on emerging work from trainees and early-career. Come for the science, stay for the line dancing.

events.faseb.orgAbstracts/Presentations - Dynamics and Encoding in Cell Signaling.Explore advances in cell communication, signaling, and imaging tech at this unique conference, bridging diverse molecular pathways and systems biology.
Lukasz Bugaj@bugajlab.bsky.social

Speaker lineup posted for FASEB: Dynamics and Encoding in Cell Signaling (June 2026)! Live-cell imaging, biosensors, signal dynamics, and quant. modeling/analysis, across the biosciences. Stellar lineup, Keynotes from Tobias Meyer and Jin Zhang Join us in Nashville! tinyurl.com/bd9wmyve

Lukasz Bugaj reposted

Speaker lineup posted for FASEB: Dynamics and Encoding in Cell Signaling (June 2026)! Live-cell imaging, biosensors, signal dynamics, and quant. modeling/analysis, across the biosciences. Stellar lineup, Keynotes from Tobias Meyer and Jin Zhang Join us in Nashville! tinyurl.com/bd9wmyve

Lukasz Bugaj reposted

Now in print at ACS Synbio! Introducing Aviatar: a concept for inducible translocation to any cell compartment using only a 1-component probe pubs.acs.org/doi/10.1021/...

pubs.acs.orgOptogenetic Translocation to Subcellular Compartments through Regulation of Protein AvidityInducible translocation to subcellular compartments is a common strategy for protein switches that control a variety of cell behaviors. However, existing switches achieve translocation through induced...
Lukasz Bugaj@bugajlab.bsky.social

Proteins often bind targets using avidity, the combined interaction strength of multiple weak binders. Now we’ve harnessed this principle for compact, *single*-component optogenetic tools for translocation. Lead by phenom PhD student @dennishuang.bsky.social #synbiosky🧵 📝 tinyurl.com/aviatar

Lukasz Bugaj reposted

Lukasz Bugaj reposted

Defending PhD student, looking over their thesis: “If I knew then what I know now, I could’ve done all of this in like 9 months.” A thread about my favorite pioneering cave explorers and why I don’t think AI will ever “solve” biology.

Speaker lineup posted for FASEB: Dynamics and Encoding in Cell Signaling (June 2026)! Live-cell imaging, biosensors, signal dynamics, and quant. modeling/analysis, across the biosciences. Stellar lineup, Keynotes from Tobias Meyer and Jin Zhang Join us in Nashville! tinyurl.com/bd9wmyve

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Summary: small fusion multimers are sufficient (tho not necessary!) to drive signaling and tumors. While condensates can form, they appear incidental. But if not condensates, then how do fusions signal from the cytoplasm? More to come here!

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2) There is lots of active oncogene (pALK) in the diffuse phase, and when treated with ALK inhibitor, timescale of decay in the diffuse phase matches that of downstream signals, but decay in condensates is much slower.

3) If condensates are dispensable, diffuse (non-condensing) ALK fusions should be able to signal and drive tumor growth. Indeed they can! Synthetic, cytoplasmic ALK dimers don’t condense but do signal, and also form tumors in mice.

The condensate (large foci) model suggests that condensates of fusions (e.g. EML4-ALK) are an essential organizer of signaling in the cyto, in the absence of membrane. Causality is unclear though because perturb's of condensates are often also perturb's of kinase activity.

Evidence of dispensability? 1) EML4-ALK condensation is biphasic (highest at mid levels), but signaling increases monotonically w expression. Thus the strongest signaling is in cells with *no* condensates.

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In sum, RTK fusions are simultaneously activators AND suppressors of mitogenic signaling. We expect future studies can exploit this suppressive behavior for biomimetic therapies designed to enhance killing & combat drug tolerance.

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Finally, synthetic optogenetic RTK fusions demonstrated the key principles: 1) Grb2 binding and sequestration could be decoupled from fusion signaling, and 2) Grb2 sequestration in the cyto is sufficient to desensitize cells to EGFR stim (without signaling).

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Mechanism? Fusions sequester adapters like Grb2 in cyto and prevent translocation to active EGFR at membrane. Previously shown for EML4-ALK, below for TPM3-ROS, same for (almost) all fusions tested

Lukasz Bugaj reposted

Replying to @hugheslabpenn.bsky.social

Researcher back to at least 1912 have noticed that nephrons, the blood-filtering units of the kidney, tend to be born just as the nearest epithelial tubule begins to branch. This tree of tubes is called the 'ureteric bud epithelium' - the future urinary collecting system.

🤩🤯 work by @hugheslabpenn.bsky.social: cyclic mechanics entrain proper dev’t timing/patterning in the kidney. Super innovative concepts and approach, congrats all!!

Alex Hughes Lab@hugheslabpenn.bsky.social

*New preprint alert* uncovering a mechanical pacemaker that synchronizes nephron formation with branching of the kidney's epithelial tubule tree. Read below to learn about this twisty journey lead by Sam Grindel and Sachin Davis in the lab. [Movie by Nils Lindstrom] www.biorxiv.org/content/10.1...

#Cellbio2025 come see the latest from the lab, including on opto/thermogenetics, condensates, RTK fusions, stress granules, biosensors of clustering. Talks and posters today and tomorrow!

Lukasz Bugaj reposted

#cellbio2025 please stop by my talk (Mon 4:35 evolution) and poster (Mon 12:45 #B479 optogenetics) tmr! Title: Intraprotein domain competition dictates pulsatile response of photoreceptors shaped by temperature and evolution. BcLOV4 as a model. I’m also looking for postdoc opportunities!

#CellBio2025 come check out the workshop on applying optogenetic tools in cell biology! Today (Sunday) at 5:30p in Rm 121. Note that this session does *not* appear in the app for some reason