Damian Dalle Nogare

I do think when historians look back the period the exact moment where it flipped and started going the other way won’t be anything any politician did but my Minneapolis neighbors weathering the worst of the regime in the streets, rallying together, fighting back, and winning

#HappyFluorescenceFriday #microscopycommunity - Congrats to the winner of the Wayne S. Rasband Open Source Imaging Award! Wayne S. Rasband Open Source Imaging Award – Curtis Rueden Learn more: buff.ly/hwKCCwU

We completed the publication project "Focus on the methods reproducibility of bioimage analysis", started in #GloBIAS 2024. Here is the editorial for the special issue of the Journal of Microscopy explaining the aim of this action (open access). onlinelibrary.wiley.com/doi/10.1111/...

We have a position open in our core facility in the @pasteur.fr . Please share it and / or apply! forum.image.sc/t/research-e...

🚀 napari is hiring Remote Developers-in-Residence! Join us to build the future of interactive n-dimensional data visualization in Python. 💻 60% Dev / 20% Maintenance / 20% Community & Outreach 💰 $59.50/hr (Contract, 14–35 hrs/wk) 🌍 100% Remote, open globally Learn more and apply today […]

Not to put too fine a point on it, but I have been yelling at anyone who will listen about these kinds of pseudo fluorescence i2i methods for years now. For sure some valid use cases, but infinitely many more ways it can (and will) be abused.

What if any dataset, any size, any number of dimensions, opened in a browser tab from a link? 🔬🧪💻 Luxar is out today: write it in Python, share it as a link, explore it in any browser. Open source. 🧵 @biohub.org Preprint: doi.org/10.5281/zen... Code: github.com/royerlab/luxar

I don't know this technique, but If they're using label free imaging followed by some kind of image-to-image translation task to generate pseudo fluorescence, that would explain a lot of the weird artifacts. But, really stretching the definition of "light microscopy" here Nikon.

Even with all the advancements in automated cell tracking getting us to 90%+ accuracy...that's still a lot of broken tracks over long movies! Our brains are pretty good at this so I made Vizsla 🐕, a little @napari.org plugin, to help you fix your tracks manually. 👉 pypi.org/project/napa...

FOCUS-3D: Robust, generalizable volumetric cell segmentation for three-dimensional fluorescence microscopy https://www.biorxiv.org/content/10.64898/2026.08.25.746907v1

Lunigiana, the land of the Moon

How your email finds me.

Ok but

I have 3, I could auction them off to highest bidder, proceeds to resistance groups :) For sticker DIY use the template: figshare.com/articles/fig...

Had an abundance of cherry tomatoes from the garden so we're making one of the simplest - and best - pasta sauces. Garlic and tomatoes in a pot, cook long and slow with salt until they've broken down completely, add fresh basil at the end.

Spatialproteomics: a Python-based toolbox for end-to-end analysis of highly multiplexed imaging data. www.nature.com/articles/s41...

While in southern Italy, had to do the thing

Microscopy Nodes 3.1 is out for Blender 5.2! 🎉 This has cool new features for conditional masking, working with even larger data (regional upscaling), and data manipulation! Watch the new youtube tutorials that explain the features: www.youtube.com/playlist?lis...

LOOK AT THIS DOG

Just enjoying another perk of living in Europe

It's an exciting day for #Fiji users! Now read and write @zarr.dev v3 and #OMEZarr v0.5. Don't want a million tiny files in your #zarr? Shard that sucker! Read the details here forum.image.sc/t/fiji-can-r...

This looks like it will be a great resource for learning bioimage analysis 👇🏻 onlinelibrary.wiley.com/doi/10.1111/...

🧪 @aicjanelia.bsky.social and @scientistrachel.bsky.social have just published a new quantitative tool, OpticalFlow3D, for tracking amorphous motion in 3D. Try it out and let us know what you think! tinyurl.com/OpticalFlow3D

📣 Tracking cells through time – including divisions – is a core problem in live-imaging microscopy. We built HOCT, an edge-centric Transformer that hits state-of-the-art on the Cell Tracking Challenge without a pretrained image encoder. Work led by @jookuma.bsky.social arxiv.org/abs/2607.11754 🧪🔬💻

(derogatory)

FINALLY a histogram in napari! ♥️

Struggling for something to do in a TWO DAY gap without ⚽? How about trying our pre-release of napari 0.8.0? napari.org/dev/release/... Of note, this release drops Py3.10 support and deprecates PyQt5 in favor of PyQt6. It also adds some neat new features and improvements! See below: 👇

Eating street food in Livorno

Delighted to share our latest preprint "NucleiSky enables cross-scale multimodal registration of microscopy data using nuclei constellations" www.biorxiv.org/content/10.6... Code and App: github.com/CellMigratio...

as always we need to be careful about what it is that we are using criticisms to actually do in the world and not just what political aesthetic we are trying to express

What if you could watch chromatin change in live neurons…..IN REAL TIME?Share if this is your dream! My lab is making biosensors to make chromatin visible as neurons wire into circuits & are hiring an Associate Scientist to build, not just execute. Apply: stjude.wd1.myworkdayjobs.com/stjude/job/M...

📢📢 We are hiring a Bioimage Analyst at the BioVisionCenter! 📢📢 Join our collaboration with the Flow Cytometry Facility and contribute back to the international efforts on open standards for bioimaging data! More information here, reach out if you have any question: jobs.uzh.ch/job-vacancie...

Ok what if the solution here is to send Ryan Gosling on a desperate mission to find the only natural predator of the algae.

napari 0.7.1 is now available!! 🚀 🎉 Read the full release notes here: napari.org/stable/relea... Highlights: the scale bar inherits units from layers, colorbars for points layers, locking layers, and a signed Windows bundle! We thank especially our 9 new brilliant contributors 🤩

Since summer is coming and I have a metric ton of mint in the garden I've been working on my mojito recipe and the two key things seem to be: More rum (like 50% more) than the recipes usually call for Using a mint simple syrup in place of regular to pack in extra mint flavor

Pretty sure I fought this guy in Expedition 33.

Thanks I've been working out

Wake up babe new panpsychism just dropped

*Frantically flipping through the pages of the latest Harpers*

Last week to apply! 👇🏻👇🏻👇🏻 (Closes Friday)

The Cimini lab is hiring for both postdocs and interns! The postdoc role will cover bioimage analysis projects and educational material creation; the intern will be working on our Bilayers project for helping distribute and access deep learning tools for bioimage analysis. Click below to learn more!

Python developers I'm am BEGGING you, on my hands and knees, to include import statements in your code examples. Please do not make me guess which combination of "from X import Y" you've used.

Microsplit paper is published! Image multiple structures in one fluorescence channel, and computationally unmix them later. Can't wait to see what the community does with this and what amazing science it can enable. Huge thanks to the coauthors!

Update from rural lunigiana: apricots and pears coming along nicely, and one lonely asparagus coming up from the patch

Only people who live in Italy will fully appreciate this, but I went to Poste Italiane this morning. By the time I had pulled the ticket out and looked at the screen my number had been called. I went to the window and she had my stuff right next to her. I was in and out in less than a minute.

Roughly two weeks (until May 15th) left to apply and join our team! Bioimage Analyst: careers.humantechnopole.it/job/Bioimage... Rsearch Software Engineer: careers.humantechnopole.it/job/Research...