An interesting take on how AI has changed bioinformatics. It definitely makes analysis faster, but not better. It makes mistakes that are common to those new to the field, but somehow it doesn't learn. divingintogeneticsandgenomics.kit.com/posts/is-bio...
Darin Takemoto
Darin Takemoto
@dtake01.bsky.social
Weeder of woods. Interests: statistics, bioinformatics, music, games.
19 followers24 following193 posts
Where life is getting more expensive, even adjusting for inflation www.nytimes.com/interactive/...
Darin Takemoto reposted
Why AI may never be conscious. Right now AI is machine learning backed by a ton of compute and data that can talk to us, and nothing more. www.nature.com/articles/d41...
Darin Takemoto reposted
Comprehensive benchmark of somatic mutation detection in human cell lines and tissues, with recommendations for mutation calling. www.cell.com/cell/fulltex...
Darin Takemoto reposted
Darin Takemoto reposted
A classifier that can detect the use of AI in long-form writing. Unlike other classifiers, this one detects 68% of cases where the core idea was AI-generated, but was rewritten by humans, suggesting that AI-generated ideas are distinct from human-generated ideas. arxiv.org/html/2610.06...
Despite the claims of RFK Jr. there still is no autism epidemic, just improved detection. Again. medicalxpress.com/news/2026-09...
Antisense-RNA therapy results in improvements in an ALS patient caused by a rare mutation in the CHCHD10 gene. Eight other patients with mutations in the same gene have been given the therapy. www.nature.com/articles/d41...
As we should endeavor to understand the full breadth of human genomic variation and not just European variation, indigenous collaborations will become more important. doi.org/rppn
Another day, another report detailing US war crimes. www.npr.org/2026/09/17/n...
Spatial transcriptomics can be really powerful, but the data are quite noisy and it is really expensive, so only use it if you need it for the problem at hand. doi.org/rpmz
Now even Ed Sheeran is saying it was the promoter's decision www.today.com/video/ed-she...
Darin Takemoto reposted
The new Macklemore video everyone’s talking about. You might think it’s about Palestine, but it’s bigger than that. It’s about social media controlling what we see, hear, and think. It’s a call to action. Whew… “fucked up.” youtu.be/sn9EKC9nqU4?...
Macklemore is being criticized for standing up for people and against genocide and imperialism. What a world. www.aljazeera.com/video/newsfe...
Darin Takemoto reposted
Darin Takemoto reposted
Darin Takemoto reposted
Darin Takemoto reposted
Darin Takemoto reposted
Darin Takemoto reposted
Darin Takemoto reposted
Darin Takemoto reposted
Darin Takemoto reposted
El-Sayed: "It means holding people like RFK Jr accountable for the DOGE-ing of our public health, for which we now need to be dodging lettuce across the state of Michigan for fear of getting explosive diarrhea, which nobody ever thought you be a consequence of electing Donald Trump, but here we are"
Darin Takemoto reposted
Animaris Rex is an 18-metre-long walking 'beach animal' propelled by the wind, created by Theo Jansen as a fusion of art and engineering. Original post
Darin Takemoto reposted
16 months after a young girl died in a gene-editing trial, the study's entry in clinicaltrial. gov has finally been updated to acknowledge the death. The move comes after @science.org and @retractionwatch.com revealed the fatality 1/ science.org/content/arti...
Darin Takemoto reposted
Darin Takemoto reposted
The US State Department acknowledged 'an unfortunate error' after the highly inaccurate African map caused a stir.
Darin Takemoto reposted
"In an extraordinary development all 55 Uefa members resolved not to participate in future World Cups or other Fifa-run events, saying in a statement that they “unanimously and unequivocally reject” the proposals" www.theguardian.com/football/202...
Just wow. Infantino's FIFA is the most corrupt organization associated with sports, and that's saying something. www.nytimes.com/athletic/747...
Are MAHA guidances backed by good science? TL;DR one of the five guidances have reasonable scientific basis. Not great when government health guidances bat at the Mendoza line. www.nature.com/articles/d41...
Oops, my bad! Looks like with this peptides guidance MAHA might have fallen below the Mendoza line: www.npr.org/2026/07/23/n...
Darin Takemoto reposted
A vessel-based clotting switch reduced arterial clots and vascular blockages in mice without increasing bleeding risk. In 74 patients, higher S1P levels also tracked with lower clotting activity. doi.org/hccfsr
The death of a girl in an n-of-1 Chinese base-editing trial last year is disclosed for the first time. The family paid $860,000 for the trial, and were not told of serious side effects found in primate studies with the base editor. doi.org/rgzs
Some useful tips if you want to use AI to make a graphical abstract for a journal article. Useful for those (like me) who are artistically-challenged. www.nature.com/articles/d41...
Five authors, including Harvard geneticist George Church, pulled their names from a recent commentary paper in Nature Methods, potentially due to a “potential U.S. government restriction” on collaborations with three blacklisted BGI units. No U.S. authors are in the final author list. doi.org/rf57
Darin Takemoto reposted
This is big. The first vaccine tested to PREVENT pancreatic cancer in high-risk individuals aacrjournals.org/cancerdiscov...
User-focused tips on scientific software evaluation. The "Ten tips" series is generally useful, but this is particularly good. doi.org/rfxp
Using germline genetic data and longitudinal electronic health records to find genetic signatures that are associated with pathogenic trajectories, which can span multiple diseases. doi.org/rfxn
An encyclopedia of human enhancer-gene regulatory interactions based on a predictive model trained on QTLs from GWAS and CRISPR perturbation experiments. doi.org/rfxk
A low-cost genome sequencing method combining 1-4x genome coverage with 30x exome coverage in a single sequencing run reduces sequencing costs by 75% and allows for accurate detection of disease-causing variants and structural variations. phys.org/news/2026-07... doi.org/hb96wp
Darin Takemoto reposted
Claudia Sheinbaum is navigating a complex term marked by cartel violence, shifting relations with the U.S., and the enduring political influence of her predecessor. resist47.news keeps you informed. #resist47 #ClaudiaSheinbaum #MexicoPolitics #USMexicoRelations #CartelViolence
Darin Takemoto reposted
🚨 MANUSCRIPT ALERT 🚨 The VGP Phase I manuscript pre-print is now live on bioRxiv! 🧬 doi.org/10.64898/202... Over 8 years, the VGP generated reference genomes for more than 800 vertebrate species, spanning ~95% of vertebrate orders and delivering some of the highest-quality genomes ever produced.
Three wrongs... is an average week in FIFA-world www.espn.com/soccer/story...
Darin Takemoto reposted
A new review summarizes advances in the treatment of multiple sclerosis, with emphasis on effective disease-modifying therapies for relapsing disease and the need for better treatments to prevent progression and rebuild myelin. Read the full review: https://nej.md/3SDJGcn
The most commonly used coffee plants do not tolerate higher temperatures (arabica) or drought (robusta) induced by climate change. Scientists are looking for ways to save coffee from climate change. www.nature.com/articles/d41...