Florian Wünnemann

Christmas time is upon us 🎄🎅! What better way to count down the days till Christmas eve than with an Advent calender? I am one day late, but here is little Nextflow advent calender I made for everyone. Check back every day at midnight EST to open a new door: flowuenne.github.io/nextflow_adv...

Join me today at the @nf-co.re help desk to discuss your questions about @nextflow.io and nf-core at 2pm Eastern Time! 🍏💻🧬!

Join us for two days of fun in Barcelona, hacking away at nf-core projects!

Check out the blog post by Nextflow Ambassador Zohaib Anwar on VIRUS-MVP: a flexible and scalable workflow for genomic surveillance of priority viruses including SARS-CoV-2, Mpox, RSV, and influenza! 🦠 👉 Read now: hubs.la/Q03lM5KG0 #NextflowAmbassador @nf-co.re

Check out this fantastic work on neighbourhood preference in spatial omics data from the Schapiro lab 🚀! Congratulations @chiaraschiller.bsky.social and team on a wonderful project! 👏🤩

You should definitely check out this amazing Nextflow podcast episode with my friend and collaborator @kbestak.bsky.social discussing microscopy and spatial omics workflows in nf-core and Nextflow! 🤩🔬🧪

My latest #Nextflow pipeline has just been published in JOSS 🎉

Running Nextflow pipelines on AWS ☁️? Check out the blogpost I wrote about using resource Labels with Nextflow and Seqera to get detailed pipeline run costs 💵.

If you want to start learning #Nextflow or brush up on your basics of #Nextflow, now is the perfect time 🕑! New training materials and support from ambassadors and experienced community members during training week help guide you through it, at your own pace! community.seqera.io/t/nextflow-t...

Come and talk about your amazing projects at the #Nextflow summit in Boston 🎤! I am very sad to miss this summit this year, but it will be a fantastic event, so make sure you to submit your abstract before the deadline 🤩!

Great opportunity to get together with your colleagues and friends and watch the training videos to learn Nextflow together 👥. 💬 Discussing things not clear to you and sending questions to the community forum are all great ways to accelerate your learning experience and increase the fun 🚀 🤩!

Interesting to see doom and gloom as separate ends of a governance axis!

New blog post: Exploring the bioRxiv API with R, httr2, rvest, tidytext, and Datawrapper doi.org/10.59350/wzt... #Rstats

Introducing @gestaltsp.bsky.social We’re growing with already >1000 members. Come be part of spatial omics revolution!!! @ioavlachos.bsky.social @lgmartelotto.bsky.social @naturegenet.bsky.social rdcu.be/d8qHT #spatial #omics #technology #computation #tissue #singlecell

Don't miss this chance to listen to my amazing colleagues Esha and Rob talk about how you can utilize Seqera Platform to help streamline your scientific data analysis! 🤩

📣 We are hiring! Join Yoshiji Lab at McGill University Dept of Human Genetics in Montreal, Canada! yoshiji-lab.org/joinus ✅Fully Funded Positions • 2 MSc Students • 1 PhD Student • 1 Postdoc ✅Goal: Using human genetics and multi-omics for drug target discovery and precision medicine

You can now use Seqera AI with MultiQC! 🤖 Get insights from your reports and chat about potential QC issues with Seqera AI, directly from inside your MultiQC reports! Fantastic new update by everyone involved at @seqera.io !

Protein backbone diffusion models consistently undersample catalytically important motifs, and oversample idealized helices, raising questions about the appropriateness of these methods in designing starting points for enzyme design & evolution. From www.biorxiv.org/content/10.1...

Are you looking for job opportunities where your #Nextflow skills are valued? Check the list we've compiled below. #Jobs #Opportunities

Interesting concept. jetty::run() executes R code in a Docker container and passes the results back into the local environment https://cran.r-project.org/web/packages/jetty/index.html (source: https://github.com/dmolitor/jetty)

I am organizing a local site in Montreal for this @nf-co.re hackathon 🇨🇦. Anyone in the area who is interested to help organize or join this hackathon and a potential #Nextflow training before, please DM me 😊!

Do you want some AI guided help to write #Nextflow pipelines or convert your old legacy pipelines to #Nextflow? Go to seqera.io and try out Seqera AI now 🤩!

Nextflow4MS-DIAL: A Reproducible Nextflow-Based Workflow for Liquid Chromatography–Mass Spectrometry Metabolomics Data Processing #JASMS pubs.acs.org/doi/10.1021/...

For anyone that loves poker and card games, Balatro is such a great game! Just started playing it again on my tablet via Apple Arcade and having a blast 🎮🃏! apps.apple.com/ca/app/balat...

Today is the last day of my #Nextflow advent calender. It was fun doing this during December and I hope people discovered things they didn't know yet about the NF ecosystem ☺️! flowuenne.github.io/nextflow_adv... Merry Christmas and a Happy New Year to everyone 🎄❄️☃️🎁🎆

I hope we get many people together across Quebec (Canada) for a local site for this hackathon. If you are interested to join our local site in person, please contact me so we can plan ahead ☺️! Excited to hack some Nextflow with many of you 👍💻

An opportunity to work at an amazing place with amazing people! 🦠 “GeneLab is seeking a #Bioinformatics #ProgramDeveloper to drive research with #omics data from space biology experiments. Develop workflows and analyze data critical to human space exploration. 🔗 Apply now: tinyurl.com/8psb8uwn “

Are you looking for job opportunities where your Nextflow skills are valued? Check the list we've compiled below. #Jobs #Opportunities

This map of Github is really cool: anvaka.github.io/map-of-githu... I feel right at home in Genomic Haven next to RWorld. Hope to visit some of these lands next year. Vuetopia and Vuestian look like cool places 😎.

Today is a special Nextflow advent calender entry, as you will need to have discovered the first hidden secret to solve this one. 🎅Santa needs help with his gift delivery Nextflow pipeline? Can you help him ☺️🦌🎁?! Open door 15 on: flowuenne.github.io/nextflow_adv...

Today's content in my Nextflow advent calender door 14 is for anyone interested in bacterial genomes 🧬 👀 @rpetit3.bsky.social flowuenne.github.io/nextflow_adv...

Protenix, another third wave AF3-like model goes Apache license github.com/bytedance/Pr...

It's exciting to see so much activity and enthusiasm in the protein folding and design space. So many new tools available (Chai-1, Boltz-1, Protenix), can't wait to see many of them used in Nextflow pipelines like nf-core/proteinfold soon (github.com/nf-core/prot...) 🤩!

Mind blowing science with 10x @10xgenomics.bsky.social #ESSB2024

Over the weekend some busy elves have hidden a secret in my personal #Nextflow Advent calender 📆. Would love to hear from people whether they can find it (but don't spoil the discovery for everyone else 😉). flowuenne.github.io/nextflow_adv... Tip: Best to discover and enjoy on 💻 versus 📱

Today's advent calender door has something for all of you that love open source software, that was recently announced at Nextflow Summit Barcelona 👀 Open the door here 🚪: flowuenne.github.io/nextflow_adv...

We are looking for a Postdoc with a strong computational background to join our team. Want to work on the development and application of computational methods in the field of translational spatial biology? Apply now! karriere.klinikum.uni-heidelberg.de/index.php?ac...

meetings.cshl.edu/courses.aspx...

Anyone that tried to open door 4 of the Nextflow advent calender today but found it closed, just pushed a fix to reset cache so it should not happen again 😅☺️ flowuenne.github.io/nextflow_adv... Today's door has something for you, if you want to learn #Nextflow!

If you are interested in spatial omics, bioinformatics, want to live in a beautiful city in Germany and work with an awesome team, you should absolutely apply for this opportunity! ☺️🚀🤩