Gibson Lab

"Longitudinal profiling of low-abundance strains in microbiomes with ChronoStrain" - Kim et al. rdcu.be/ekTwf

#Newresearch This Bayesian statistical method uses timeseries microbiome data to infer interaction modules and is tested using a faecal transplant experiment in mice. #MicroSky www.nature.com/articles/s41...

A nice blog post about our work www.nature.com/articles/s41... can be found here mgriblog.org/2025/08/04/c...

Our paper is now open access as well.

🚨 Out now! Chronostrain - a method to profile low abundance strains in longitudinal microbiome samples 🦠💻 @travis.gibsonlab.io @younhk.bsky.social @gibsonlab.io @harvardmed.bsky.social @broadinstitute.org #MicroSky 🦠 #MicrobiomeSky www.nature.com/articles/s41...

Several Postdoctoral Fellow openings. All fellows have triple appointment at HMS,BWH, and Broad - Biological sequence models (theory, design, and application) - Learning single cell dynamics - Bacteriotherapy design, “bugs-as-drugs” (using control theory principles) gibsonlab.io/openings/

Paper just accepted Gibson et al. "On the stability of gradient descent with second order dynamics for time-varying cost functions" Transactions Machine Learning Research (2025) openreview.net/forum?id=Hlz...