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JPWeiland
JPWeiland
@jpweiland.bsky.social
Scientist+Engineer. Infectious disease modeler. Posts and spelling mistakes my own
10.7K followers77 following633 posts
In essence, this is no different than running risky Gain-of-Function research on a dangerous pathogen... Uncontrolled H5N1 outbreaks on mink farms are a global risk, as Mink have α2,6 receptors similar to humans. The virus could evolve that infection route in Mink www.propublica.org/article/bird...
Sept 5th Update: As predicted in June, a relatively modest late summer wave is occurring in the West and South, less than half numbers last summer. Texas about half of last year. Midwest and NE are still at minimal levels. 🔸️180k infections/day 🔸️1 in 350 currently infectious 🔸️W+S about 3x MW+NE
🔸️Wastewater levels on both WWScan and Biobot remain at rock bottom levels. 5-8x lower than previous lulls and 50-80x lower than our last big waves in 2024. 🔸️<40k infections/day 🔸️We may still see a small late summer wave for the West and South.
PJ.2.1 is a brand new, highly mutated variant (from a BA.2.86 Pirola base) It's looking to me like it may have some speed 👀 Will continue to monitor this one. Most interesting variant in a good while.
Fourteen more PJ.2.1 wastewater detections. It is dominant in many sites. NYC (8), Maui (2). Maine, Virginia, Florida and DC. No obvious uptick in cases in any of these places that I could find though.
There are 10,000x MORE stars in the universe than grains of sand *on all the beaches and deserts on earth* In that context, our radio signals first sent out 100 years ago have not even reached the next grain of sand. The rest of the universe has no idea we're here.
Anyone with even a high school background in biology would know "cross breeding" with aliens is an insane impossibility. If aliens were on earth (they're not), their genetic code language and cellular mechanisms would be different than earth life. You'd have better luck crossing humans with a radish
Anyone with even a high school background in biology would know "cross breeding" with aliens is an insane impossibility. If aliens were on earth (they're not), their genetic code language and cellular mechanisms would be different than earth life. You'd have better luck crossing humans with a radish
↘️ @kkjetelina.bsky.social 's YLE has a wonderful analysis here, calling out the continuously receding peaks in hospitalizations over the past 4 years. We see the same trends in wastewater. The question that plagues WW is whether the signal/infection has decreased over the past few years.
March 29th Update: Nearing record lows in transmission since Omicron in late 2021. Midwest and South are low, while Northeast and West are at very low transmission levels. Estimates: 🔸135,000 new infections/day 🔸~1 in 500 currently reasonably infectious (5 day avg window)
A few of us were looking into this recently as well in Luxembourg, & it was remarkable how few BA.3.2 sequences were from the elderly, and how many were from younger groups. We may have narrowed the co-circulation target. Worth digging further. Ty @josetteschoenma.bsky.social for pulling these data
Someone suggested BA.3.2 might preferentially infect kids. I think they're right. Ages of SARS-2 sequences since Dec 1 in Ireland: non-BA.3.2 6/66 (9.1%) age 0-19, (0/1 hospital tests) BA.3.2 43/91 (47.3%) age 0-19 (1/3 hospital tests) 1/4
JPWeiland reposted
While the final outcome for BA.3.2 is uncertain, its distinct characteristics—extensively remodeled/shortened spike NTD & SD1/SD2, novel S2 mutations, & wholesale deletion of ORF7a/7b/8—make it the best candidate for co-dominance we've seen yet, which could mark a new era in SARS-2 evolution. 1/34
BA.3.2 is behaving differently than any of the other variants we've seen. I've been wondering for some time if this is our first example of co-circulation, where only part of the population is susceptable to infection. It is starting to look stabilized in Germany, does not look like a sweep.
We see this behavior with endemic viruses like flu, where multiple variants can exist without one replacing the other (H3N2 vs H1N1 vs Flu B). Niche partitioning has different susceptible groups based on immune histories, genetics, age, etc. New Covid variants have always swept the previous (below).
I can't express enough how nice it is to receive feedback like this in my replies! It's a large part of what makes me continue to do this work.
You're the most level headed and accurate source I'm able to find out there, by a long shot. Your information makes a big difference to my family and I always look forward to your posts to have a clear understanding of things. Thank you so sincerely!