Karel "CaCO3" Berka

Sad news to #CompChem Pavel Jungwirth passed away… www.uochb.cz/en/news/811/...

If you want to play some biochemical boardgame on summer holidays - you can try my AA-Dobble - karelberka.github.io/amino-acid-d... #proteins #chemsky

Part 2 may be of most use to experienced users of AlphaFold and related programs. It covers the origin of the AF scores in benchmarking protein structure prediction (GDT-TS, LDDT, TM score) and the AF versions of these scores (pLDDT, PAE, ipTM, ipSAE, LIS). www.youtube.com/watch?v=WW_X...

I gave a workshop on AlphaFold & related programs @ the University of Utah. Part 1 covers protein structure prediction before/after AlphaFold & deep learning neural networks. Part 2 covers the math behind the scores. Part 3 covers PyMOL & the webservers. youtube.com/@rolanddunbr...

nice #alphafoldology gym for alternative structure prediction

sampleworks allows you to hold the experimental loss fixed and benchmark structure predictors head-to-head, or freeze the model and sweep guidance methods + hyperparameters. github.com/diff-use/sam...

Did you ever see the "Not The Nine O'Clock News" sketch? m.youtube.com/watch?v=asUy...

another #alphafoldology tool - DeltaDiff - for prediction of mutant protein structures.

pipeline for #alphafoldology pipeline for identification of PPIs

🧬 Claude isn't the only AI that can query PDBe. PDBe MCP Servers work with other AI clients too, such as Google Antigravity. You only need one protocol for any MCP-compatible AI. 🎥 Watch the install walkthrough 👇 📦 github.com/PDBeurope/PDBe-MCP-Servers #PDBe #MCP #GoogleAntigravity #AI

Power of Boron lecture by Michael Londesborough from IIC AV CR at @fchupol.bsky.social www.youtube.com/live/j3PvXHe... #chemsky

Sebastian Hiller on integrative NMR #pps2026

Andrea Soranno on IDP biophysics #ppps2026

Ahrum Son on protein structural changes in alzheimer’s disease #pps2026

And great opening of Prague Protein Spring by David Baker @nd-bakerlab.bsky.social #pps2026

Next speaker is Michele Vendruscolo on dugging undruggable #pps2026

Eugene Shakhnovich on chaperonines helping bacteia to resist antibiotics #pps2026

Patricia Clark on silent mutations and protein folding #pps2026

On neurodegeneration by Nikolay Dokholyan #pps2026

Alena Khmelinskaia @akhmelinlab.bsky.social promoting @rosettacommons.bsky.social -Con after her amazing talk on design of protein nanostructures #pps2026

Sameer Velankar @pdbeurope.bsky.social @ebi.embl.org ready to his talk on AI in biology #pps2026

Gennady Verkhivker on AI and allostery in protein kinases #pps2026

Basile Wicky @ethz.ch on protein design #pps2026

Tomas Pluskal @pluskal-lab.org on plants, their products and AI #pps2026

Agnes Toth-Petroczy @tothpetroczylab.bsky.social on IDPs #pps2026

New Syntax for PDB DOIs for Entries Released After July 21, 2027 PDB entries deposited after July 20, 2027 will only be assigned extended PDB IDs and will follow a new DOI syntax.

Babička je do neděle v aukci. Držte palce, nebo si ji radši vydražte ;) www.obrazyvaukci.cz/polozka/maco...

Originální řešení pro velkoobjemový #3Dtisk vzniká i v Česku. Byl jsem se podívat za Jiřím Samkem v Hradci Králové na velkého robota, který umí připravovat obrovské výtisky z termoplastů. A tím „obrovské“ myslím v řádu mnoha metrů a mnoha tun. Mikroreportáž: www.linkedin.com/posts/tomvit...

Been training for this moment my whole life.

Olomouc na Zemi, Zeměkoule na AFO v Olomouci

na AFO jsem si zaridil Marsovsky rover, hec @chmee2.bsky.social

Artistic beauty of protein structures by @irinabezsonova.bsky.social