Iñaki Ruiz-Trillo

Iñaki Ruiz-Trillo

@multicellgenome.bsky.social

How did single cells become animals? We study animal's closest unicellular relatives to reconstruct the origin of animal life. #Multicellularity https://www.multicellgenome.com

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1/3 Remember our #Magnificent8? 8 mysterious lineages related to animals, known only from environmental DNA. 🧬 We suspected they were just the tip of the iceberg, hiding many more "unknown unknowns". Our new preprint suggests we were right. 🧵 👉https://bit.ly/3TUYowB #protistsOnSky

1/3 Remember our #Magnificent8? 8 mysterious lineages related to animals, known only from environmental DNA. 🧬 We suspected they were just the tip of the iceberg, hiding many more "unknown unknowns". Our new preprint suggests we were right. 🧵 👉https://bit.ly/3TUYowB #protistsOnSky

3/3 Why does this matter? Because our reconstruction of the unicellular ancestor depends on which living relatives we study. And perhaps the next breakthrough in animal origins will come from organisms we have yet to discover. We also provide a roadmap to find them @prbb.org @csic.es

Such sad news. I was lucky to share several years with Emili in the @geneticsub.bsky.social , as well as conferences and many good moments. I will remember him very fondly. My thoughts are with his family, friends and colleagues.

Genetics UB@geneticsub.bsky.social

Amb molta tristesa acomiadem el Dr. Emili Saló Boix, que ha dedicat molts anys de la seva trajectòria al nostre Departament amb una dedicació i una intensitat exemplars. La seva pèrdua ens deixa un gran buit. El seu record i la seva empremta, però, perduraran entre nosaltres. Descansi en pau. 🖤

Fantastic work on a fascinating organism. Grateful to have contributed a very small part, all credit to the teams who led it. What we liked most: how can genetically identical modules acquire different identities and functions, yet remain integrated as one individual? Highly recommend Alex’s 🧵 👇

Alex de Mendoza@alexdemendoza.bsky.social

Sailing in @biorxivpreprint.bsky.social ready for summer, our study on the iconic Portuguese man o' war 🪼 is out: www.biorxiv.org/content/10.6.... We use (epi)genomics to understand a critter that fascinates me since childhood. Massive team effort with @obog.bsky.social, Cummins and Neely groups. 🧵

Iñaki Ruiz-Trillo reposted

Nice work @thibautbrunet.bsky.social et al. It fits a view we find compelling: the ancestor of animals may have switched between different cell states, and perhaps different multicellular entities. Maybe we should reconstruct an ancestral life cycle, not an ancestral cell type. #protistsOnSky

Thibaut Brunet@thibautbrunet.bsky.social

🚨 New preprint alert! 🚨 Choanoflagellates reorganize their global cytoskeletal architecture within seconds to explore confined microspaces. This is the main PhD work of the amazing @maitefreired.bsky.social www.biorxiv.org/content/10.6... A tread 🧵⬇️

Interesting piece by @quantamagazine.org on how transposable elements went from "junk DNA" to drivers of genome innovation. Could this negotiation between selfish elements and host genomes have contributed to the origin of animal gene regulation? Holozoans may help us find out. 🧬 #Protistsonsky

Quanta Magazine@quantamagazine.org

We are in no small part made of virus. Over millions of years, our DNA has accumulated so many viral snippets that they now make up 8% of our total genome. https://www.quantamagazine.org/how-virus-like-jumping-genes-became-our-partners-in-evolution-20260921/

Very grateful to have been part of such a special and emotional day celebrating Sara Bray & Nick Brown at their Retirement Symposium. Two outstanding scientists and, even more importantly, truly wonderful people. Thank you, Sara and Nick, for such a memorable day! #protistsOnSky

Iñaki Ruiz-Trillo reposted

Great to see this, Omaya! The search for the missing diversity of unicellular relatives of animals is gaining momentum, and it’s fantastic to see more labs joining the hunt. New #ichthyosporeans would be exciting!! new holozoan lineages too! #protistsOnSky #missingrelatives

For two weeks, our entire lab is dropping everything to focus on one mission: deploying @embl.org's Advanced Mobile Laboratory to cultivate microbial eukaryotes from Alpine ecosystems. Our dream? Isolating new #Ichthyosporeans never cultured before. Let's see what we find. 🔬🏔️

Iñaki Ruiz-Trillo reposted

1/7 Really interesting new preprint by Mannsåker et al. on the evolution of TRP channels in #choanoflagellates. But what caught my attention wasn't simply the diversity of these sensory receptors. It was something more general about how biological innovation may arise. 🧵 #protistsOnSky

Pawel Burkhardt@pawelburkhardt.bsky.social

How ancient are the building blocks of animal sensory systems? Key components of animal sensory systems evolved before animals. We find that choanoflagellates possess diverse & spatially segregated TRP channels, pointing to ancient origins of sensory specialization. doi.org/10.64898/202...

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6/7 Perhaps this reflects a broader evolutionary principle. The ancestor of animals may already have possessed a rich molecular toolkit. Different holozoan lineages then expanded different parts of that toolkit independently. Evolution was already experimenting long before animals appeared.

1/7 Really interesting new preprint by Mannsåker et al. on the evolution of TRP channels in #choanoflagellates. But what caught my attention wasn't simply the diversity of these sensory receptors. It was something more general about how biological innovation may arise. 🧵 #protistsOnSky

Pawel Burkhardt@pawelburkhardt.bsky.social

How ancient are the building blocks of animal sensory systems? Key components of animal sensory systems evolved before animals. We find that choanoflagellates possess diverse & spatially segregated TRP channels, pointing to ancient origins of sensory specialization. doi.org/10.64898/202...

View full thread

5/7 The evolutionary dynamics are also interesting. Some TRP families remain relatively conserved. Others show extensive lineage-specific expansions. That pattern reminds me of receptor tyrosine kinases in choanoflagellates and filastereans: www.science.org/doi/10.1126/...

science.orgGenomic Survey of Premetazoans Shows Deep Conservation of Cytoplasmic Tyrosine Kinases and Multiple Radiations of Receptor Tyrosine KinasesA genomic survey suggests that cytoplasmic tyrosine kinases diversified before the establishment of multicellular organisms.

1/7 Really interesting new preprint by Mannsåker et al. on the evolution of TRP channels in #choanoflagellates. But what caught my attention wasn't simply the diversity of these sensory receptors. It was something more general about how biological innovation may arise. 🧵 #protistsOnSky

Pawel Burkhardt@pawelburkhardt.bsky.social

How ancient are the building blocks of animal sensory systems? Key components of animal sensory systems evolved before animals. We find that choanoflagellates possess diverse & spatially segregated TRP channels, pointing to ancient origins of sensory specialization. doi.org/10.64898/202...

2/7 Animals rely on specialized sensory cells. Their unicellular ancestors probably did not. This study shows that closest unicellular relatives of animals already possessed a remarkably diverse repertoire of TRP channels and that these proteins occupy distinct subcellular territories.

3/7 The spatial segregation is particularly interesting to us. Different TRP families localize to different regions of the collar complex and flagellum. Even within a single cell, sensory systems appear to be spatially organized. That may have broader implications for animal origins.

Thank you for the invitation @embldbunit.bsky.social and the stimulating discussions. I left with many new ideas, more questions to explore, and the feeling that we share an appreciation for exploring the unknown!

EMBL DB unit@embldbunit.bsky.social

Huge thanks to Iñaki Ruiz-Trillo for opening our Developmental Biology series 26/27 @embl.org. Iñaki showed us how studying our closest unicellular relatives is reshaping what we know about animal origins and why exploring the unknown is key to any field. We couldn't have asked for a better start! 🦠

1/2 Embryonic organizers, a group of cells that can coordinate the behaviour of many others. have been viewed as one of the true innovations of animals. Fascinating new paper @kremnyovs.bsky.social @hejnol.bsky.social @genikhovich.bsky.social et al. now reports organizer activity in #ctenophores.

The organizer requires β-catenin and TGFβ signalling (which seem animal-specific). So, now we wonder: How did this population of cells acquire that capacity? Could some kind of proto-organizer have existed before animals? Congrats to the authors!

1/3 Cell adhesion is considered one of the foundations of animal #multicellularity. Yet whether #ctenophores possess a functional cadherin–catenin complex has remained surprisingly controversial. A new study revisits that question. 🧵 @ctenophoresrock.bsky.social

Molecular Biology and Evolution@molbioevol.bsky.social

Guttieres et al. suggest that core molecular interactions of the cadherin–catenin complex are conserved in ctenophore Mnemiopsis leidyi, suggesting this was an ancestral trait foundational to the evolution of multicellular animals. 🔗 doi.org/10.1093/molbev/msag123 #evobio #molbio

2/3 The authors show that ctenophores possess a functional #cadherin–catenin interaction network. The cadherin–catenin complex is one of the central systems underlying animal cell adhesion and tissue organization.

3/3 Interestingly, ctenophore cadherins do not look exactly like the classical cadherins found in most animals. And yet the interactions still work! Another reminder that evolution works with whatever is available. Congrats to the authors!

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8/9 And they raise an intriguing possibility. If microorganisms can expand across ocean basins while still retaining traces of their history... How much reflects natural processes? How much bears the signature of human-mediated dispersal?

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7/9 More broadly, our results provide a unified framework for comparing biogeographic patterns across major eukaryotic groups. A unified framework for discussing dispersal, connectivity and population structure from protists to animals.

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4/9 Yet they are not genetically homogeneous. The same haplotypes can occur across distant oceans. At the same time, populations frequently retain detectable genetic structure. This combination is difficult to reconcile with a simple view of unrestricted cosmopolitanism.