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Iñaki Ruiz-Trillo
Iñaki Ruiz-Trillo
@multicellgenome.bsky.social
How did single cells become animals? We study animal's closest unicellular relatives to reconstruct the origin of animal life. #Multicellularity https://www.multicellgenome.com
2.2K followers2.1K following297 posts
2/3 We identified 31 uncharacterized lineages across Holozoa & opisthokonts. Some are deep evolutionary branches outside any known group of animal relatives. Others are hidden within groups we thought we knew. Many are widespread, yet we know nothing about them! @ibe-barcelona.bsky.social
Such sad news. I was lucky to share several years with Emili in the @geneticsub.bsky.social , as well as conferences and many good moments. I will remember him very fondly. My thoughts are with his family, friends and colleagues.
Amb molta tristesa acomiadem el Dr. Emili Saló Boix, que ha dedicat molts anys de la seva trajectòria al nostre Departament amb una dedicació i una intensitat exemplars. La seva pèrdua ens deixa un gran buit. El seu record i la seva empremta, però, perduraran entre nosaltres. Descansi en pau. 🖤
Fantastic work on a fascinating organism. Grateful to have contributed a very small part, all credit to the teams who led it. What we liked most: how can genetically identical modules acquire different identities and functions, yet remain integrated as one individual? Highly recommend Alex’s 🧵 👇
Sailing in @biorxivpreprint.bsky.social ready for summer, our study on the iconic Portuguese man o' war 🪼 is out: www.biorxiv.org/content/10.6.... We use (epi)genomics to understand a critter that fascinates me since childhood. Massive team effort with @obog.bsky.social, Cummins and Neely groups. 🧵
Iñaki Ruiz-Trillo reposted
We've been funded to start using Dictyostelium as a model system for early endomembrane evolution!! Now I'm hiring a Postdoc to join the lab in Edmonton and start playing with Dicty in the lab:) iaejup.fa.ocs.oraclecloud.com/hcmUI/Candid...
Iñaki Ruiz-Trillo reposted
In our new paper by Kata Szabó et al. we present optimised sample-preparation workflows for volume electron microscopy for entire small marine organisms. The workflow includes high-pressure freezing, various freeze substitution protocols and synchrotron […] [Original post on biologists.social]
Iñaki Ruiz-Trillo reposted
Wrapping up a fantastic field season #laserscanning #Ediacaran fossils in Newfoundland @discoverygeoparknl.bsky.social and Mistaken Point. Our 10th year of laser scanning 🥳
Iñaki Ruiz-Trillo reposted
Interested in joining our lab (dunnlab.org) and YIBS as a postdoc? I'm looking for someone to work on siphonophores, diversity in the open ocean, or natural history. If that's you, please reach out this week to discuss a nomination for the Donnelley Postdoc Fellowship - yibs.yale.edu/donnelley-fe...
#Evolution can innovate without inventing. Cell type families can retain ancient regulatory “vocabularies”, while individual cell types evolve by reshuffling how those motifs are combined. @natecoevo.nature.com New cell types from old regulatory words. We like this! doi.org/10.1038/s415...
A new sea urchin joins the evo-devo toolkit! Great to see Mespilia globulus established as a new model. @ferdix.bsky.social @elife.bsky.social One model can reveal a specific mechanism. Multiple models can reveal how evolution works. elifesciences.org/reviewed-pre...
Nice work @thibautbrunet.bsky.social et al. It fits a view we find compelling: the ancestor of animals may have switched between different cell states, and perhaps different multicellular entities. Maybe we should reconstruct an ancestral life cycle, not an ancestral cell type. #protistsOnSky
🚨 New preprint alert! 🚨 Choanoflagellates reorganize their global cytoskeletal architecture within seconds to explore confined microspaces. This is the main PhD work of the amazing @maitefreired.bsky.social www.biorxiv.org/content/10.6... A tread 🧵⬇️
Iñaki Ruiz-Trillo reposted
Our paper describing two new photosynthetic Paulinella species is out today in JPhycol! This is the kind of work I love to do and even it though took many years to finish, we had a lot of fun stomping around together in the marsh! onlinelibrary.wiley.com/doi/10.1111/... #protistsonsky
Interesting piece by @quantamagazine.org on how transposable elements went from "junk DNA" to drivers of genome innovation. Could this negotiation between selfish elements and host genomes have contributed to the origin of animal gene regulation? Holozoans may help us find out. 🧬 #Protistsonsky
We are in no small part made of virus. Over millions of years, our DNA has accumulated so many viral snippets that they now make up 8% of our total genome. https://www.quantamagazine.org/how-virus-like-jumping-genes-became-our-partners-in-evolution-20260921/
We have a new branch in the family tree of animals: Atreyea- a previously unrecognized lineage among the closest unicell relatives of animals. Led by @konsmitsi.bsky.social & @freejakoba.bsky.social together with a fantastic team of collaborators. 🔗 papers.ssrn.com/sol3/papers.... #protistsOnSky
Iñaki Ruiz-Trillo reposted
Lovely to see several pieces of our ctenophore work featured in this beautiful new story from @quantamagazine.org 🪼 Great piece by @mstarling.bsky.social, also featuring work by @stevehaddock.bsky.social, @arnausebe.bsky.social & @hejnol.bsky.social. www.quantamagazine.org/ctenophores-...
Great to see this, Omaya! The search for the missing diversity of unicellular relatives of animals is gaining momentum, and it’s fantastic to see more labs joining the hunt. New #ichthyosporeans would be exciting!! new holozoan lineages too! #protistsOnSky #missingrelatives
For two weeks, our entire lab is dropping everything to focus on one mission: deploying @embl.org's Advanced Mobile Laboratory to cultivate microbial eukaryotes from Alpine ecosystems. Our dream? Isolating new #Ichthyosporeans never cultured before. Let's see what we find. 🔬🏔️
Iñaki Ruiz-Trillo reposted
Ruibao's first paper from the lab is out in @nature.com . www.nature.com/articles/s41.... Collab with @multicellgenome.bsky.social & @jennahed.bsky.social. How did cells stick together and form the first animals? The protist Ministeria suggests cellular aggregation had a role. @iuqcb.bsky.social
Did cell types exist before animals? What if the first cell types evolved before the first animals? We'll use #ichthyosporeans, tiny microbes with the potential to reshape how we think about animal origins. #ProtistsOnSKy @ibe-barcelona.bsky.social @prbb.org @csic.es 🧵
🚨 Master's internship available at our lab. Join us to investigate the phenotypic plasticity and life cycles of several #ichthyosporean species using cell biology & microscopy. Interested? Get in touch with Vika Shabardina or DM us. Link: www.ibe.upf-csic.es/work-with-us...
Most people have never heard of #apusomonads. Yet these tiny protists occupy an important position in the eukaryotic tree of life. And we know so little about them! We're looking for a Master's student to help uncover their hidden diversity. #ProtistsOnSky 🧵 @ibe-barcelona.bsky.social @prbb.org
🚨 Master's internship available at our lab. Join us to mine global environmental sequencing datasets and build the first global atlas of this fascinating lineage. Interested? Get in touch with Guifré Torruella or DM Link: www.ibe.upf-csic.es/work-with-us... @csic.es
1/7 Really interesting new preprint by Mannsåker et al. on the evolution of TRP channels in #choanoflagellates. But what caught my attention wasn't simply the diversity of these sensory receptors. It was something more general about how biological innovation may arise. 🧵 #protistsOnSky
How ancient are the building blocks of animal sensory systems? Key components of animal sensory systems evolved before animals. We find that choanoflagellates possess diverse & spatially segregated TRP channels, pointing to ancient origins of sensory specialization. doi.org/10.64898/202...
7/7 Animal sensory systems were probably built by integrating ancient ones into new biological architectures. Congrats to the authors! @smannsaker.bsky.social @pawelburkhardt.bsky.social @jeffcolgren.bsky.social
1/7 Really interesting new preprint by Mannsåker et al. on the evolution of TRP channels in #choanoflagellates. But what caught my attention wasn't simply the diversity of these sensory receptors. It was something more general about how biological innovation may arise. 🧵 #protistsOnSky
How ancient are the building blocks of animal sensory systems? Key components of animal sensory systems evolved before animals. We find that choanoflagellates possess diverse & spatially segregated TRP channels, pointing to ancient origins of sensory specialization. doi.org/10.64898/202...
4/7 Perhaps the evolutionary route toward sensory complexity began with new ways of organizing existing ones inside single cells. Subcellular patterning before cellular specialization. This fits well with the "beta-testing" pre-metazoan phase we recently proposed: doi.org/10.1038/s443...
5/7 The evolutionary dynamics are also interesting. Some TRP families remain relatively conserved. Others show extensive lineage-specific expansions. That pattern reminds me of receptor tyrosine kinases in choanoflagellates and filastereans: www.science.org/doi/10.1126/...
1/7 Really interesting new preprint by Mannsåker et al. on the evolution of TRP channels in #choanoflagellates. But what caught my attention wasn't simply the diversity of these sensory receptors. It was something more general about how biological innovation may arise. 🧵 #protistsOnSky
How ancient are the building blocks of animal sensory systems? Key components of animal sensory systems evolved before animals. We find that choanoflagellates possess diverse & spatially segregated TRP channels, pointing to ancient origins of sensory specialization. doi.org/10.64898/202...
Thank you for the invitation @embldbunit.bsky.social and the stimulating discussions. I left with many new ideas, more questions to explore, and the feeling that we share an appreciation for exploring the unknown!
Huge thanks to Iñaki Ruiz-Trillo for opening our Developmental Biology series 26/27 @embl.org. Iñaki showed us how studying our closest unicellular relatives is reshaping what we know about animal origins and why exploring the unknown is key to any field. We couldn't have asked for a better start! 🦠
1/2 Embryonic organizers, a group of cells that can coordinate the behaviour of many others. have been viewed as one of the true innovations of animals. Fascinating new paper @kremnyovs.bsky.social @hejnol.bsky.social @genikhovich.bsky.social et al. now reports organizer activity in #ctenophores.
Embryonic ‘organizer cells’ can tell embryos of various phyla what kind of body to build go.nature.com/4eolVvS
Iñaki Ruiz-Trillo reposted
Do you have interesting protist research that you want to publish? Now is a great time to consider The Journal of Eukaryotic Microbiology. But don't just take our word for it, check out some of our latest metrics! onlinelibrary.wiley.com/journal/1550... #protistsonsky
Iñaki Ruiz-Trillo reposted
Can a single cell behave like a Bayesian agent? In this new paper by @maorknak.bsky.social, E Casacuberta & @multicellgenome.bsky.social show that eukaryotic cells trained with reliable cues survived stress better by using Bayesian guesses @ibe-barcelona.bsky.social journals.aps.org/prxlife/pdf/...
1/3 Cell adhesion is considered one of the foundations of animal #multicellularity. Yet whether #ctenophores possess a functional cadherin–catenin complex has remained surprisingly controversial. A new study revisits that question. 🧵 @ctenophoresrock.bsky.social
Guttieres et al. suggest that core molecular interactions of the cadherin–catenin complex are conserved in ctenophore Mnemiopsis leidyi, suggesting this was an ancestral trait foundational to the evolution of multicellular animals. 🔗 doi.org/10.1093/molbev/msag123 #evobio #molbio
1/9 For years, debates about microbial biogeography have sometimes been framed as a choice. Either microorganisms are everywhere. Or geography matters. But what if that is a false choice? @ibe-barcelona.bsky.social @icreacommunity.bsky.social @prbb.org @csic.es #protistsOnSKy
1/9 For years, debates about microbial biogeography have sometimes been framed as a choice. Either microorganisms are everywhere. Or geography matters. But what if that is a false choice? @ibe-barcelona.bsky.social @icreacommunity.bsky.social @prbb.org @csic.es #protistsOnSKy
1/9 For years, debates about microbial biogeography have sometimes been framed as a choice. Either microorganisms are everywhere. Or geography matters. But what if that is a false choice? @ibe-barcelona.bsky.social @icreacommunity.bsky.social @prbb.org @csic.es #protistsOnSKy
1/9 For years, debates about microbial biogeography have sometimes been framed as a choice. Either microorganisms are everywhere. Or geography matters. But what if that is a false choice? @ibe-barcelona.bsky.social @icreacommunity.bsky.social @prbb.org @csic.es #protistsOnSKy
2/9 Our study, lead by Rubén, compares #protists, animals and plants within a single population-genetic framework. We ask how their genetic diversity is distributed across the world's oceans. Link: www.science.org/doi/10.1126/...