nf-core

github.comRelease detaxizer 1.4.0 - wegbutza · nf-core/detaxizerSummary of changes nf-core/mag samplesheets compatible with version 5.x Fixed filtering with BBMAP and BLASTN Updated nf-core template (now 4.1.0) Follow current nextflow (v26.10) requirements De...

Pipeline release! nf-core/detaxizer v1.4.0 - detaxizer 1.4.0 - wegbutza! Please see the changelog: https://github.com/nf-core/detaxizer/releases/tag/1.4.0

github.comRelease 2.0.1 - 'I was a Teenage Hand Model' · nf-core/genomeassemblercodenamegenerator.com stopped working. Codenames from now on will be song titles. Added #252 Added AGENTS.md #233 Update tower.yml with the report paths (the execution trace pattern was fixed i...

Pipeline release! nf-core/genomeassembler v2.0.1 - 2.0.1 - 'I was a Teenage Hand Model'! Please see the changelog: https://github.com/nf-core/genomeassembler/releases/tag/2.0.1

New blog post! nf-core/tools - 4.2.0 https://nf-co.re/blog/2026/tools-4_2_0/

github.comRelease v1.1.0 - Copper Hairpin · nf-core/rnastructuromeContributors: @Vicbeg. Reviewers: @vagkaratzas, @piplus2, @nschan, @d4straub. Behaviour change: treated groups whose sample_group shares no leading substring with any control now get no control; th...

Pipeline release! nf-core/rnastructurome v1.1.0 - v1.1.0 - Copper Hairpin! Please see the changelog: https://github.com/nf-core/rnastructurome/releases/tag/1.1.0

github.comRelease nf-core/magmap v1.3.1 · nf-core/magmapWhat's Changed Memory use no longer grows with the number of samples: the feature counts of each sample are split and joined in DuckDB instead of R, and CUSTOM_COLLECTFEATURECOUNTS runs with the p...

Pipeline release! nf-core/magmap v1.3.1 - nf-core/magmap v1.3.1! Please see the changelog: https://github.com/nf-core/magmap/releases/tag/1.3.1

github.comRelease 1.0.0 · nf-core/provenancereportWhat's Changed First draft / skeleton of provenancereport by @atrigila in #15 User provided quarto input and container by @atrigila in #16 Remove vulnerable PR-comment artifact pattern by @mashehu...

Pipeline release! nf-core/provenancereport v1.0.0 - 1.0.0! Please see the changelog: https://github.com/nf-core/provenancereport/releases/tag/1.0.0

Thanks to everyone who joined us for the Hackathon in Barcelona last week.🤩18 projects, socks, rubber duck prizes, networking, and more! 📸Check out the photo gallery and share your favorite moments with #NextflowSummit: hubs.la/Q04BHv-r0

nf-core reposted

Seqera

@seqera.io

2 days, 18 projects, 60+ participants.🌏 Last week in Barcelona, the @nextflow.io community gathered for the @nf-co.re hackathon plus two hands-on training workshops.📸 Check out the photos: hubs.la/Q04BHv-r0. Share your favorite moments with #NextflowSummit

github.comRelease nf-core/rnasplice 2.0.0 - Fenix Reborn · nf-core/rnasplicenf-core/rnasplice: Changelog v2.0.0 - Fenix Reborn - [2026-10-20] The first release since 1.0.4 in April 2024 brings the pipeline up to the nf-core template 4.1.0, Nextflow 26.04 and nf-schema. Hig...

Pipeline release! nf-core/rnasplice v2.0.0 - nf-core/rnasplice 2.0.0 - Fenix Reborn! Please see the changelog: https://github.com/nf-core/rnasplice/releases/tag/2.0.0

And the first rubber duck has been awarded for finding the most sock stickers in the sock hunt! 🦆🧦#NextflowSummit

Kicking of day 2 of the Hackathon with an nf-core quiz!🍏 Who's ready to win a rubber duck? 🦆

The meme game is strong here in Barcelona. Great progress across all the projects today. Excited to see how far we get by tomorrow. But first: time for the rooftop social!🌆🍸

nf-core/megaboigniter

AI-assisted template updates

The meme game is strong here in Barcelona. Great progress across all the projects today. Excited to see how far we get by tomorrow. But first: time for the rooftop social!🌆🍸

AWS megatests clean up

nf-core/seqsubmit

The meme game is strong here in Barcelona. Great progress across all the projects today. Excited to see how far we get by tomorrow. But first: time for the rooftop social!🌆🍸

Benchmarking

nf-core/spatialaxe improvements

The meme game is strong here in Barcelona. Great progress across all the projects today. Excited to see how far we get by tomorrow. But first: time for the rooftop social!🌆🍸

Popstructure (online team)

nf-core/mag improvements

The meme game is strong here in Barcelona. Great progress across all the projects today. Excited to see how far we get by tomorrow. But first: time for the rooftop social!🌆🍸

nf-core/seqinspector

Agentic module development

The meme game is strong here in Barcelona. Great progress across all the projects today. Excited to see how far we get by tomorrow. But first: time for the rooftop social!🌆🍸

DART-seq

Docs improvements

The meme game is strong here in Barcelona. Great progress across all the projects today. Excited to see how far we get by tomorrow. But first: time for the rooftop social!🌆🍸

Static typing

CAPTn-seq

The meme game is strong here in Barcelona. Great progress across all the projects today. Excited to see how far we get by tomorrow. But first: time for the rooftop social!🌆🍸

Module container conversion party

sarek!!

New blog post! Kicking off the Benchmarking SIG Monthly Meetings https://nf-co.re/blog/2026/benchmarking-sig-launch/

nf-core reposted

Nextflow

@nextflow.io

🔥 If you're here in Barcelona, make sure to grab the latest swag from @nextflow.io, @nf-co.re, and @seqera.io. 🧦👕 Socks, stickers, t-shirts, and lanyards. #NextflowSummit

github.comRelease 3.2.0 - Bebenhausen · nf-core/epitopepredictionAdded #362 Optional germline_vcf samplesheet column: the patient's germline calls are folded into the neoepitope windows as context, so wild-type and mutant sequences are the patient's own rather ...

Pipeline release! nf-core/epitopeprediction v3.2.0 - 3.2.0 - Bebenhausen ! Please see the changelog: https://github.com/nf-core/epitopeprediction/releases/tag/3.2.0

Did someone say stickers? nf-core, merge cowgirl and cowboys, and awesome new designs! 🤠

nf-core reposted

Seqera

@seqera.io

💻 The @nextflow.io Training and @nf-co.re Hackathon are officially underway at the #NextflowSummit in Barcelona! We're excited to kick things off and thrilled to have so many of you here with us.

Welcome to the nf-core Hackathon in Barcelona!🙌 All experience levels joining forces to tackle projects spanning community, pipelines, components, tooling, and special interested groups.🤩 Let the fun begin! #NextflowSummit

The Barcelona Hackathon is happening tomorrow! Today's project spotlight ⬇️ ⚒️ Project → AI-assisted template updates 🧑‍💻 Project Leads → Phil Ewels, @seqera.io 🔗 Project Link → nf-co.re/hackathon-pr...

🥅 Project Goal Get as many nf-core pipelines as possible onto the latest template, using agentic coding tools to do the merge work. We’ll build agent skills and instructions as we go based on the experience, to make syncs easier for people in the future.

nf-co.reHackathon - October 2026 (Barcelona)An in-person hackathon held in Barcelona

💻 Discover all projects: nf-co.re/events/2026/...

github.comRelease nf-core/bacmodel v1.0.0 - Cindy Crawford · nf-core/bacmodel

Pipeline release! nf-core/bacmodel v1.0.0 - nf-core/bacmodel v1.0.0 - Cindy Crawford! Please see the changelog: https://github.com/nf-core/bacmodel/releases/tag/1.0.0

2 days to go until the Barcelona hackathon, with an incredible 18 projects lined up! Today's project spotlight🧵#NextflowSummit

🥅 Project Goal Work out how nf-core pipelines should be made composable into meta-pipelines, and which standards need to be in place first. Composition is something nf-core should support, but how to do it is not settled, and part of the session is agreeing the path.

nf-co.reHackathon - October 2026 (Barcelona)An in-person hackathon held in Barcelona

💻 Discover all projects: nf-co.re/events/2026/...

2 days to go until the Barcelona hackathon, with an incredible 18 projects lined up! Today's project spotlight🧵#NextflowSummit

nf-co.renf-coretooling - Barcelona

⚒️ Project → Meta-pipelines and pipeline composition 🧑‍💻 Project Leads → Jonathan Manning, @seqera.io 🔗 Project Link → nf-co.re/hackathon-pr...

github.comRelease plasmodiumdrugres v1.0.0 · nf-core/plasmodiumdrugresWhat's Changed Add PGEcore as a submodule by @kathrynmurie in #1 Feature/add count samples by coi module by @kathrynmurie in #4 Update PGEcore by @kathrynmurie in #6 Adding dockerfile by @kathrynm...

Pipeline release! nf-core/plasmodiumdrugres v1.0.0 - plasmodiumdrugres v1.0.0! Please see the changelog: https://github.com/nf-core/plasmodiumdrugres/releases/tag/1.0.0

github.comRelease Drugresponseeval 1.3.0 - Bubbly Blastoise · nf-core/drugresponseevalBlastoise is a blue Pokémon whose body is mostly hidden by its tough, brown shell. The two powerful water cannons on its back can produce water blasts that can pierce steel and concrete and be used...

Pipeline release! nf-core/drugresponseeval v1.3.0 - Drugresponseeval 1.3.0 - Bubbly Blastoise! Please see the changelog: https://github.com/nf-core/drugresponseeval/releases/tag/1.3.0

3 days to go until the Barcelona Hackathon! 🎉 Today's project spotlight 👇 ⚒️ Project → nf-core/seqsubmit improvements 🧑‍💻 Project Leads → Sofia Ochkalova (@ebi.embl.org) & Varsha Kale (Aalborg University) 🔗 Project Link → hubs.la/Q04zSzmV0

🥅 Project Goal nf-core/seqsubmit is a pipeline that automates submission of sequencing data to ENA and it recently got its first release. Aim to make it easier to test and contribute to, and extend it to cover cases it can’t handle yet, such as co-assemblies, eukaryotic bins/MAGs, long read data

nf-co.reHackathon - October 2026 (Barcelona)An in-person hackathon held in Barcelona

💻 Discover all projects: nf-co.re/events/2026/...

github.comRelease 5.1.2 - Ventus Hotfix II · nf-core/airrflowFixed Update singularity and docker containers to replace the ones with expired certificates in modules gunzip.nf and unzip_db.nf.

Pipeline release! nf-core/airrflow v5.1.2 - 5.1.2 - Ventus Hotfix II! Please see the changelog: https://github.com/nf-core/airrflow/releases/tag/5.1.2