Most birds use a funny running style: grounded running. It's a paradox: GR costs more energy than normal running, but animals usually minimize costs.
Do birds waste energy? We resolve this with a model of the emu (the best bird).
Published in @science.org Advances last Sept
(reposting my x 🧵s)
1/18
New paper: "Dissecting the Metabolic Costs of Uphill and Downhill Walking." We used MSK simulations, evaluated against EMG, ultrasound, and metabolic data, to partition the metabolic cost of uphill and downhill walking into muscle force- and work-related costs onlinelibrary.wiley.com/doi/10.1111/...
😃 In a new article published in J Biomech, Bijlert demonstrates that the plane strain modulus and dissipation parameters are not scale invariant.
👀 buff.ly/JN8BqCF
Double preprint alert! 🚨
Jaws: Baby shark 🦈
We used micro-CT scanning to examine the tessellated calcified cartilage in the jaws of 10 young chondrichthyans in 3D. We found some surprises—like chunky trabeculae in a baby nurse shark!
Many thanks to all my co-authors for their help and support!
Excited to share our new paper in Science Advances! Led by Dr Wei Wang at #IVPP in Beijing, it presents a complete skeleton of #Austronaga, the most marine of all archosauromorphs. To boot, this fossil preserves the oldest complete digestive tract of any reptile! www.science.org/doi/10.1126/...
I am thrilled to introduce seven new species of diamond frogs from Madagascar! A new monograph on the genus Rhombophryne published #OpenAccess in Vertebrate Zoology. 🧪🐸
doi.org/10.3897/vz.7...
My Bachelor's thesis has been published! We examined the problematic taxonomy of Zygorhiza kochii and Dorudon serratus, with implications for the wider taxonomy of the basilosauridae. A small thread:
Excited to share our latest study highlighted on the cover of @science.org 🥳Combining a 3D dataset representing 250 taxa spanning the whole Cenozoic, 3D modelling & printing and material testing; we deciphered the form-function relationship in the lower 🦷 of mammals www.science.org/doi/10.1126/...
I’m happy to say the first chapter of my dissertation has just gotten published! Here, we compared the results of two prominent tools for measuring muscle architecture from contrast data, Xfiber and Goodfibes, with some recommendations for each.
anatomypubs.onlinelibrary.wiley.com/doi/10.1002/...
[1/2] Thank you very much for this great collaboration on #lagomorphs 🐇
Pillai et al @boehmergroup.bsky.social@uni-kiel.de 2026 Oikos. Home and away: allometry and #climate drive morphology of European #rabbits in their native and introduced range
doi.org/10.1002/oik....
Had a great time presenting my final PhD chapter yesterday at SEB 2026 in Florence @sebiology.bsky.social
Did you miss it, or just want to discuss dinosaur or emu locomotion? Come find me at the conference!
"But Pasha, what does this have to do with dinosaurs?"
This project actually started because I struggled with the contact model while simulating my T. rex, and wanted parameters that were consistent with my emu model.
🐦➡️🦖
Stay tuned...
bsky.app/profile/pash...
This is the most maths-heavy paper I've written, and I hope others find it useful.
The paper, code, and models are all open access (via the paper and Zenodo). If you know someone working with musculoskeletal simulations, I'd really appreciate you sharing it!
And if you use direct collocation, you also *must* scale SmoothSphereHalfSpaceForce (Appendix C). Else, small models can literally float above the ground.
Default smoothing can cause too much force-build up before actual intersections (demo in @adamkewley.bsky.social's @opensim.bsky.social creator)
I took a deep dive into the model and derived equations that make both the static and dynamic behaviour of these contacts completely scale invariant.
I then tested the approach on animal models spanning a wide size range.
That included @cjclemente.bsky.social's giant human and @jamescharles90.bsky.social's mouse model.
If you enjoy the maths, there's a full "Theory and derivations" section. Otherwise, the Discussion provides practical recommendations for different simulation scenarios.
Spheres with Hertz-style deformation and Hunt–Crossley dissipation are a popular way to model contact in musculoskeletal simulations.
But - they can be unintuitive, which is a problem because inappropriate contact parameters can over/underestimate energy costs and also cause numerical issues
Neither "stiffness" nor dissipation are scale invariant, and they don't even scale linearly with size (the paper explains why "stiffness" is in quotation marks 😉).
This means contact parameters that work for an adult human won't automatically work for a child, a small bird, or a giraffe.
Since I got back from 🇦🇺 I've been so focused on finishing my PhD, I nearly forgot to do a follow-up! Spending ~4 months in @cjclemente.bsky.social's lab was an amazing experience, filled with animal biomechanics and of course - fieldwork! Here's one of our drone shots from the Strzelecki Desert
Made it to the Sunshine Coast to visit @cjclemente.bsky.social and (soon) @taylorjmdick.bsky.social for the next three months! We'll full be doing physics simulations and robot experiments in Chris's lab, and even some fieldwork studying the locomotor biomechanics of wild emus and kangaroos
Thanks @cjclemente.bsky.social, for the mentorship! Also thank you @taylorjmdick.bsky.social for all of the support and the many inspiring discussions on biomechanics!
Not pictured: Chris and Taylor
Since I got back from 🇦🇺 I've been so focused on finishing my PhD, I nearly forgot to do a follow-up! Spending ~4 months in @cjclemente.bsky.social's lab was an amazing experience, filled with animal biomechanics and of course - fieldwork! Here's one of our drone shots from the Strzelecki Desert
Made it to the Sunshine Coast to visit @cjclemente.bsky.social and (soon) @taylorjmdick.bsky.social for the next three months! We'll full be doing physics simulations and robot experiments in Chris's lab, and even some fieldwork studying the locomotor biomechanics of wild emus and kangaroos
Chris and PhD student Jasmin Annett took us (Finn Roggendorf and me) out to collect biomechanical data from wild emus and kangaroos using drones. Working on two new pipelines for this (using drone photogrammetry - stay tuned, I've paused working on those papers until I submit my thesis...😅)
🚨 #preprint alert🚨
Everyone loves high resolution paleorecords, but what determines their temporal resolution and orderedness?
New counterintuitive results with implications for #conservation#paleobiology and age depth modeling
#sedimentology 1/n
eartharxiv.org/repository/v...
New in @science.org ...since our first discoveries of early tetrapods, they have been thought of as "amphibians" characterized by aquatic larvae. But is this true? For the first time, we report exceptional fossils of stem tetrapod babies that upend this paradigm. 1/n
www.science.org/doi/10.1126/...
First paper of my PhD is out! 🎉 We ran a sensitivity analysis of digital range of motion and found that outcomes can vary a lot depending on how you select the articular surface or define joint centre. General takeaway is share your models alongside results!
doi.org/10.1111/joa....
Muscles don’t just move you - sometimes they slam the brakes 🛑💪
New paper: starting length + temperature strongly reshape the biphasic force response during eccentric contractions
A special June 1st #DinosaurDay post by ICB co author
@pashavanb.bsky.social 🙌
A #book review of The Princeton Encyclopedia of #Dinosaursintegrativeandcomparativebiology.wordpress.com/2026/06/01/t...#fossils#dinos#science
Stumbled across this video - really interesting seeing how a chicken walks with a tail that can correctively balance. I bet if you did this with a duck, and strapped half a paper plate to its back, we'd get a decent idea of what Spinosaurus was doing.
www.youtube.com/watch?v=DfsP...
Our work on mammalian hallucal grasping, led by Irene Montañez-Rivera during her time in the @johnnyakatura.bsky.social group, is out now in iScience. A true team effort; thanks to the whole crew for inviting me to contribute a small piece! www.cell.com/iscience/ful...
For those who want ellipsoid wrapping in their musculoskeletal models, I've worked out a simple implementation in @blender.org that will soon be added to MuSkeMo (github.com/PashavanBijl...).
Most birds use a funny running style: grounded running. It's a paradox: GR costs more energy than normal running, but animals usually minimize costs.
Do birds waste energy? We resolve this with a model of the emu (the best bird).
Published in @science.org Advances last Sept
(reposting my x 🧵s)
1/18
Join us for our first CNB virtual mini symposium 🐓🏃🏻♀️! future events suited to additional time zones coming soon; join our mailing list on our website (link in flyer) to stay in the loop.