paulschanda.bsky.social

paulschanda.bsky.social

@paulschanda.bsky.social

Passionate for integrated structural biology, including NMR and many more. Particularly interested in protein dynamics, and therefore chaperones, enzymes and mitochondrial protein import. Fortunate to lead a great research team at IST Austria.

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Basically this means that if I take this budget seriously, if I go to the US every year, I exhausted the annual limit within a day. Eating? Heating? Housing? Doing research? Well I may, but not if I take the carbon budget seriously. So where are my priorities? Or do I just not care? Tough choices.

But don't I "have to"travel to lots of conferences for my job?, some colleagues would ask? I don't know. Maybe I was lucky (surely), but the fact that I went overseas "only" 6 times in 20+ years of career in NMR did not impact my career. Lucky? Not generally true? Maybe. Again, tough choices.

When it comes to climate change, I think the idea of a "per person carbon budget" is a rather useful one. IPCC estimates say that every human shall not emit > 3-4 tons per year if we want to stay below 2° warming (with all the mess that this already creates). 4 t CO2 is a round trip to the US.

paulschanda.bsky.social reposted

Most PDB structures report one set of coordinates. But the experimental data behind them, in both X-ray crystallography and cryo-EM, is produced by an ensemble of structures. How to extract this ensemble data at scale has been a quest in structural biology for 40+ years.

Happy to see our paper out today: Guiding AlphaFold3 with experimental data. We are totally excited about the possibility to leverage the power of AlphaFold3 AND of experiments! www.nature.com/articles/s41... It has been a fantastic collaboration with great colleagues in the Bronstein team at ISTA.

nature.comExperiment-guided AlphaFold3 resolves measurement-consistent protein ensembles - Nature BiotechnologyA generative model using AlphaFold3 as prior infers protein conformational ensembles consistent with measured experimental data.

First author, ISTA PhD student Advaith Maddipatla. Co-leading authors: @alex-bronstein.bsky.social, Ailie Marx, @paulschanda.bsky.social, and @sankethvedula.bsky.social.

Huge congrats to Lewis! From my very first days in #NMR (and until now!), Lewis’ work has been an immense source of inspiration for me — outstanding in scientific rigor, technical elegance, with groundbreaking applications that reveal, for example, "invisible" transient states crucial for function.

Magnetic Resonance News@nmr900.bsky.social

Professor Lewis E. Kay @lek-lab.bsky.social University of Toronto/SickKids, has been promoted to Companion of the Order of Canada, the highest level of the Order of Canada, for his pioneering biomolecular NMR research, and training a new generation of scientists www.gg.ca/en/appointme... #NMRchat 🧲

Have a look our recent story about protein dynamics, led by Lea Becker. Her insights into the impact of crystal packing on protein dynamics have implications for #structural-biology, #NMR and #crystallography.

Several techniques cannot reveal all protein conformations that may be essential for biological function. In particular, crystallization can lock molecules into a limited set of rigid structures, while the same protein can breathe much more freely in solution. Read more: bit.ly/4fNr579

The relevance of this work goes far beyond our favourite pet protein (GB1 here). It has implications for what is becoming very popular these days: protein-dynamics studies by #crystallography, such as with #XFEL sources. Our study shows how dynamics is impacted in the crystal.

We combined NMR spectroscopy in solution and in crystals, and crystallography (including at room temperature), and MD simulations. Our key finding: aromatic ring flips are massively slowed down by the crystal. More than 1000x slower than in solution!

MD simulations told us about the underlying mechanisms. And also show that what is called "breathing motion" is actually a complex rearrangement of interactions that have to be re-shuffled such that the ring can rotate. T-dependent MAS NMR told us how the crystal restricts such motions.

Aromatic rings can rotate by 180° -- so-called ring flips -- but to do so their surrounding needs to make some space. These collective dynamic modes are sometimes called "breathing motions", a poorly defined term that has been around for 45 years. But what is this? And does it exist in crystals?

New publication: mr.copernicus.org/articles/7/2... Congrats to Lea Becker for this work, which she lead from the experiment design to the manuscript. Amazing to work with PhD students like Lea. We show how to accelerate 19F solid-state #NMR experiments, with application to a 0.5 MDa large protein.

mr.copernicus.orgAccelerated 19F biomolecular magic-angle spinning NMR with paramagnetic dopantsAbstract. The advantageous characteristics attributed to the 19F nucleus have made it a popular target for nuclear magnetic resonance (NMR) once again in recent years. Aside from solution NMR, an incr...

Returning from an amazing Proteostasis meeting, with lots of new ideas & grateful for great feedback about our mitochondrial-import work. Traveling back from Frankfurt to Vienna by train, I am reminded of the CO2-emissions savings of train vs. plane travel. Also in 2026, I won't take a plane.

I heard many great lectures of yours, and have no doubt that this is highly deserved. Congrats!

Kresten Lindorff-Larsen@lindorfflarsen.bsky.social

Proud and honoured to receive the Novo Nordisk Foundation’s Prize for Natural Science Teachers together with Birthe Kragelund and Karen Skriver Teaching takes a village, and I owe many many thanks to amazing colleagues, students, and collaborators over the years science.ku.dk/english/pres...

Scientists: How long have you waited for journal editors to decide whether the journal sends your manuscript out for review? I’m at 2+ months with a “prestigious” journal — not easy when working in a competitive field. What’s the longest you’ve experienced? #AcademicPublishing #PeerReview

📢 Check out Ben Tatman's talk in the Magnetic Resonance Seminar series online (see details below). He will talk about methods to probe protein dynamics by magic-angle spinning #NMR. Friday, Jan 23, noon CET.

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Ben will talk about his recent work on relaxation-dispersion MAS NMR, including published work )https://pubs.acs.org/doi/full/10.1021/jacs.5c09057) and some new ideas on analysis of relaxation-dispersion NMR to probe microsecond dynamics.

pubs.acs.orgBumps on the Road: The Way to Clean Relaxation Dispersion Magic-Angle Spinning NMRMicrosecond-to-millisecond motions are instrumental for many biomolecular functions, including enzymatic activity and ligand binding. Bloch-McConnell Relaxation Dispersion (BMRD) Nuclear Magnetic Reso...

📢 New preprint alert! How do proteins enter mitochondria? We uncovered a surprising mechanism at the mitochondrial entry gate—using #NMR, in vivo single-particle tracking, yeast experiments, and MD simulations to crack the code. www.biorxiv.org/content/10.6... #StructuralBiology #Mitochondria 🧵 1/8

biorxiv.orgA dynamic displacement mechanism drives protein import into mitochondriaMost mitochondrial proteins are produced in the cytosol and imported through the translocase of the outer mitochondrial membrane (TOM) to reach their final destination. Although this protein entry gat...
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Collectively, our data reveal a new functional mechanism, which nature came up with to deal with the contradictory requirements of preprotein binding to the receptors, but also efficient release for translocation. This dynamic mechanism is likely in place at many similar systems. 🧵7/8

📢 New preprint alert! How do proteins enter mitochondria? We uncovered a surprising mechanism at the mitochondrial entry gate—using #NMR, in vivo single-particle tracking, yeast experiments, and MD simulations to crack the code. www.biorxiv.org/content/10.6... #StructuralBiology #Mitochondria 🧵 1/8

biorxiv.orgA dynamic displacement mechanism drives protein import into mitochondriaMost mitochondrial proteins are produced in the cytosol and imported through the translocase of the outer mitochondrial membrane (TOM) to reach their final destination. Although this protein entry gat...
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These data suggest another role: keeping Tom20 and Tom70 in vicinity of the TOM gate. We used single-molecule tracking experiments in live cells to investigate this role. Indeed: Tom22’s transient helix is a key element that keeps the receptor proteins close to the import gate. 🧵5/8

📢 New preprint alert! How do proteins enter mitochondria? We uncovered a surprising mechanism at the mitochondrial entry gate—using #NMR, in vivo single-particle tracking, yeast experiments, and MD simulations to crack the code. www.biorxiv.org/content/10.6... #StructuralBiology #Mitochondria 🧵 1/8

biorxiv.orgA dynamic displacement mechanism drives protein import into mitochondriaMost mitochondrial proteins are produced in the cytosol and imported through the translocase of the outer mitochondrial membrane (TOM) to reach their final destination. Although this protein entry gat...
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We found that the cytosolic domain of Tom22— traditionally called a “receptor” — is mostly unfolded, with a short transient helix. MD simulations show the range of states. But how does a receptor interact with the incoming precursor proteins? And is this preprotein-bining even its actual role? 🧵3/8

We deciphered Tom22 ’s actual role: its transient helix competes with precursor proteins for binding to the two “real” receptor (Tom20, Tom70). In doing so, Tom22 acts as a precursor-protein displacement element, right above the TOM pore, to release precursor protein for translocation 🧵4/8

📢 New preprint alert! How do proteins enter mitochondria? We uncovered a surprising mechanism at the mitochondrial entry gate—using #NMR, in vivo single-particle tracking, yeast experiments, and MD simulations to crack the code. www.biorxiv.org/content/10.6... #StructuralBiology #Mitochondria 🧵 1/8

biorxiv.orgA dynamic displacement mechanism drives protein import into mitochondriaMost mitochondrial proteins are produced in the cytosol and imported through the translocase of the outer mitochondrial membrane (TOM) to reach their final destination. Although this protein entry gat...

Almost all mitochondrial proteins are imported through the TOM complex: a beta-barrel pore and “receptor proteins” on the cytosolic side. The “central receptor” protein, Tom22, has remained enigmatic. In cryoEM structures, Tom22 was mostly unresolved, or in contradictory conformations.
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There are many opportunities in many groups. Check the research on the ISTA web site ista.ac.at In our group we specifically look for candidates with a strong interest in structural biology and NMR. Experience in protein production, and/or NMR, possibly also in ML and EM, are particularly welcome.

#NMR spectroscopists in and around Austria: join us for this meeting. A few great keynote speakers, and lots of space for contributed talks from students and postdocs. Taking place at ISTA @istaresearch.bsky.social in February 2026

Federico Napoli@iomichiamofede.bsky.social

So excited to announce the first 🧲 Next Austrian NMR Meeting 🧲, happening @ ISTA, Feb 26–27, 2026! Plus a satellite workshop, 💊 “ #NMR in #DrugDiscovery” 🧭 on Feb 25! 📅 Registration: Dec 1, 2025 🌐 Program, venue: austrian-nmr-meeting.pages.ist.ac.at #NMRchat #Austria 1/4