scverse

Two inspiring days in Berlin just wrapped up with our scverse hackathon on single-cell and spatial proteomics and it’s hard not to feel energized by what this community can do together.

What stood out most was how naturally these efforts connect back to the broader vision of scverse: building a unified, extensible ecosystem for all things single-cell A big thank you to our sponsors who made this possible: 10x Genomics, Biohub, Proteintech, Lamin, and Pfizer.

Two inspiring days in Berlin just wrapped up with our scverse hackathon on single-cell and spatial proteomics and it’s hard not to feel energized by what this community can do together.

Across the hackathon, teams worked on: • data analysis workflows for single-cell and spatial proteomics • shaping best practices and documentation for the field • expanding core data structures to better support proteomics needs

Two inspiring days in Berlin just wrapped up with our scverse hackathon on single-cell and spatial proteomics and it’s hard not to feel energized by what this community can do together.

We will have our next community meeting on Tue, March 17, 2026, 11AM CST/ 9AM PST ! Lucas Diedrich and Vincenth Brennsteiner, will be presenting on Alphabase and Alphapepttools: tools to make proteomics analyses easier. Zoom registration link in 🧵

We will have our next community meeting on Tue, March 17, 2026, 11AM CST/ 9AM PST ! Lucas Diedrich and Vincenth Brennsteiner, will be presenting on Alphabase and Alphapepttools: tools to make proteomics analyses easier. Zoom registration link in 🧵

We will have our next community meeting on Tue, March 17, 2026, 11AM CST/ 9AM PST ! Lucas Diedrich and Vincenth Brennsteiner, will be presenting on Alphabase and Alphapepttools: tools to make proteomics analyses easier. Zoom registration link in 🧵

We're excited to announce that registration for our upcoming Spatial Omics workshop has opened! Details in 🧵

Our core team members, Sara Jimenez and Tim Treis, in collaboration with Physalia courses, will guide participants from preprocessing and quality control through to the analysis of spatial omics data.

We will have our next community meeting on Tue, Feb 17, 2026, 11AM CST/ 9AM PST ! Kexin Huang, will be presenting on Biomni: a general-purpose biomedical agent. Details in 🧵

We will have our next community meeting on Tue, Feb 17, 2026, 11AM CST/ 9AM PST ! Kexin Huang, will be presenting on Biomni: a general-purpose biomedical agent. Details in 🧵

We will have our next community meeting on Tue, Feb 3, 2026, 11AM CST/ 9AM PST ! Philipp A will be presenting on HoloViz: High-level tools to simplify visualization in Python. Details in 🧵

We will have our next community meeting on Tue, Feb 3, 2026, 11AM CST/ 9AM PST ! Philipp A will be presenting on HoloViz: High-level tools to simplify visualization in Python. Details in 🧵

We will have our first community meeting of 2026 on Tue, Jan 20, 2026, 11AM CST/ 9AM PST ! Ian Ferenc Diks (@ianfd.bsky.social) will be presenting on SingleRust: A High-Performance Toolkit for Single-Cell Data Analysis at Scale.

We will have our first community meeting of 2026 on Tue, Jan 20, 2026, 11AM CST/ 9AM PST ! Ian Ferenc Diks will be presenting on SingleRust: A High-Performance Toolkit for Single-Cell Data Analysis at Scale.

We’re looking for a Community Manager to help shape and support the growing scverse ecosystem. Deadline January 10, 2026! More details here: jobs.helmholtz-muenchen.de/jobposting/d...

You’ll help: • Coordinate our international community • Host meetups + support workshops, hackathons, conferences • Communicate releases & community milestones • Contribute to visual identity and outreach • Support sponsorships & training materials

We will have our next community meeting on Tuesday, 2025-11-25 at 11:00 CST! Malte Kuehl (@maltekuehl.com) will be presenting on BioContextAI! More information and Zoom registration link in 🧵

We will have our next community meeting on Tuesday, 2025-11-25 at 11:00 CST! Malte Kuehl (@maltekuehl.com) will be presenting on BioContextAI! More information and Zoom registration link in 🧵

We will have our next community meeting on Tuesday, 2025-11-11 at 11:00 CST! Eric Armingol will be presenting on scCellFie! More information and Zoom registration link in 🧵

scCellFie is a computational framework that infers metabolic activities from both single-cell and spatial transcriptomic data, enabling large-scale, interpretable analyses across cell atlases.

Meet the keynote speakers for the 2025 scverse conference! Elham Azizi, Associate Professor of Cancer Data Research and Biomedical Engineering at Columbia University 🧵 @elhamazizi.bsky.social @columbiauniversity.bsky.social #scverse #scverse2025 #machinelearning #genomics #cancerimmunology

Elham Azizi, Associate Professor of Cancer Data Research and Biomedical Engineering at Columbia University will be talking about her work using machine learning to decode the tumour microenvironment!