Sen Pei
Sen Pei
@senpei.bsky.social
Asst Prof @ColumbiaMSPH. A mix of Infectious Diseases, Environmental Health, Network Science & Complex Systems. Views are my own. Website: https://senpei-cu.github.io/
1.9K followers547 following127 posts
Sen Pei reposted
ποΈ Weβre kicking off the first seminar of the new academic year with @senpei.bsky.social He will discuss how to use mathematical models to uncover hidden disease transmission, improve forecasting, surveillance, risk assessment, and outbreak control Details π½ www.lshtm.ac.uk/newsevents/e...
πͺοΈ Weβre launching the Hurricane Mobility Tracker, an interactive dashboard showing how population movement changes before, during, and after hurricanes, using cellphone-derived foot-traffic data. Check it out and share with anyone who may be interested! π hurricane-mobility.fly.dev
Iβm delighted to be an invited speaker at the ARCANE Workshop on Modeling Antimicrobial Resistance, October 19-21, 2026 in Paris. The call for abstracts is now open! Submit your abstract here: arcane.sciencesconf.org Thanks to the organizers. Look forward to seeing many colleagues in Paris!
π Great opportunity to work with Prof. Alan Cohen @cusciofhealth.bsky.social and me to develop novel metrics of biological health at the whole-organism level. Please reach out if you are interested!
Postdoctoral research fellow in the biological dynamics of health www.linkedin.com/posts/alan-c... @senpei.bsky.social
Important work from @dalarsen.bsky.social on wastewater surveillance! Genetic variability in wastewater is a better indicator of community transmission. A great reminder that existing surveillance data often contain far more information than we currently extract. www.science.org/doi/10.1126/...
Welcome to join Columbia Mailman seminar series on infectious disease modeling featuring Prof. Jessica Metcalf @jessmetcalf.bsky.social from Princeton University on 5/5 Tue at 12 pm ET! Open to the public over Zoom. For information and registration: events.columbia.edu/cal/event/ev...
Welcome to join Columbia Mailman seminar series on infectious disease modeling featuring Prof. Pejman Rohani from the University of Georgia on 4/21 Tue at 2 pm ET! Open to the public over Zoom. For information and registration: events.columbia.edu/cal/event/ev...
Welcome to join Columbia Mailman seminar series on infectious disease modeling featuring Prof. Jeff Imai-Eaton @jeff-imai-eaton.bsky.social from Harvard @hsph.harvard.edu on 4/7 Tue at 12 pm ET! Open to the public over Zoom. For information and registration: events.columbia.edu/cal/event/ev...
Sen Pei reposted
Join ESPIDAM 2026 β the European Summer Program in Infectious Disease Analysis & Modelling! A unique training opportunity for early-career researchers in epidemic modelling π¦ π β³ Early bird deadline: March 31 www.su.se/english/divi...
Sen Pei reposted
Come work with me at Penn State on the dynamics of pathogen elimination. We're hiring up to two positions to support our work on measles/rubella and foot and mouth disease elimination @ciddpsu.bsky.social
It was a great pleasure to host a visit by @theferrarilab.bsky.social ! Super interesting talk and tons of impactful works on measles and rubella.
Got to give a talk today at Mailman School of Public Health with a view of the Hudson River* in the background. Thanks to @senpei.bsky.social for hosting me! *I grew up "up the river" in the shadow of Sing Sing Prison.
Honored to be elected as a Steering Committee Member of the MIDAS network @midas-network.bsky.social Grateful to give back to a community that has shaped my career, and looking forward to supporting early-career investigators and strengthening engagement with international scholars.
Sen Pei reposted
Welcome to join Columbia Mailman seminar series on infectious disease modeling featuring Prof. Matthew Ferrari @theferrarilab.bsky.social from Penn State on 3/17 Tue at 12 pm EST! Open to the public over Zoom. For more information and registration: events.columbia.edu/cal/event/ev...
Welcome to join Columbia Mailman seminar series on infectious disease modeling featuring Prof. Virginia Pitzer from Yale on 2/10 Tue at 12 pm EST! Open to the public over Zoom. For more information and registration: events.columbia.edu/cal/event/ev...
Presymptomatic transmission is a key determinant of the controllability of respiratory viruses. This nice study used household data to quantify presymptomatic transmission of influenza and Omicron. Important findings with implications for modeling and control. www.nature.com/articles/s44...
Sen Pei reposted
Dont miss the ESPIDAM summer program in June 2026 in Stockholm, covering many key concepts for ID modelling: stochastic models, AI for ID control, nowcasting and forecasting, phylodynamics, data analysis, network models, within-host models, health economics www.statistics.su.se/english/divi...
Excited to share a new study published in PNAS! @pnas.org We reconstructed the early, cryptic spatial spread of 2009 H1N1 influenza and SARS-CoV-2 across US metropolitan areas. Linkπhttps://www.pnas.org/doi/10.1073/pnas.2518051123 #PandemicPreparedness #InfectiousDisease #HumanMobility
Excited to share a new study published in PNAS! @pnas.org We reconstructed the early, cryptic spatial spread of 2009 H1N1 influenza and SARS-CoV-2 across US metropolitan areas. Linkπhttps://www.pnas.org/doi/10.1073/pnas.2518051123 #PandemicPreparedness #InfectiousDisease #HumanMobility
Excited to share a new study published in PNAS! @pnas.org We reconstructed the early, cryptic spatial spread of 2009 H1N1 influenza and SARS-CoV-2 across US metropolitan areas. Linkπhttps://www.pnas.org/doi/10.1073/pnas.2518051123 #PandemicPreparedness #InfectiousDisease #HumanMobility
Glad to share our latest study, led by Han Yong Wunrow @hwunrow.bsky.social, on estimating time-varying reproduction numbers (Rt) using data assimilation methods, now published in the Journal of the Royal Society Interface! Link: royalsocietypublishing.org/rsif/article...
Glad to share our latest study, led by Han Yong Wunrow @hwunrow.bsky.social, on estimating time-varying reproduction numbers (Rt) using data assimilation methods, now published in the Journal of the Royal Society Interface! Link: royalsocietypublishing.org/rsif/article...
I am teaching Introduction to Network Science for a third year at Columbia Mailman! @cupublichealth.bsky.social Very grateful to have positive evaluations from students with diverse backgrounds. Welcome to join this small-size, engaged course if you are interested in networks and systems thinking!
Very interesting study on respiratory virus transmission in schools! "Prolonged exposure in shared, poorly ventilated spaces, which potentially includes several infectious sources, drives respiratory virus transmission more than close contact." www.nature.com/articles/s41...
Welcome to join Columbia Mailman @cupublichealth.bsky.social seminar series on infectious disease modeling featuring Prof. Mark Jit @markjit.bsky.social from NYU on 12/16 Tue at 12 pm EST! Open to the public over Zoom. For more information and registration: π events.columbia.edu/cal/event/ev...
Grateful to @natcomms.nature.com for featuring our AMRO inference study as one of the Editorsβ Highlights in #PublicHealth: www.nature.com/collections/...
Sharing our new study on identifying asymptomatic carriers of antimicrobial-resistant organisms (AMROs) in hospitals, out in @natcomms.nature.com. We combine patient mobility, clinical cultures, EHR, and genomics to identify hidden AMRO carriers. #AMR #HAI #HospitalEpi Link π rdcu.be/eQKKF 1/
Sharing our new study on identifying asymptomatic carriers of antimicrobial-resistant organisms (AMROs) in hospitals, out in @natcomms.nature.com. We combine patient mobility, clinical cultures, EHR, and genomics to identify hidden AMRO carriers. #AMR #HAI #HospitalEpi Link π rdcu.be/eQKKF 1/
Huge thanks to my collaborators and co-authors for their incredible work on this project! Code and examples are available here π github.com/SenPei-CU/AM... 6/
Read a story from Mailman on this study: www.publichealth.columbia.edu/news/scienti... end/
Sharing our new study on identifying asymptomatic carriers of antimicrobial-resistant organisms (AMROs) in hospitals, out in @natcomms.nature.com. We combine patient mobility, clinical cultures, EHR, and genomics to identify hidden AMRO carriers. #AMR #HAI #HospitalEpi Link π rdcu.be/eQKKF 1/
Sharing our new study on identifying asymptomatic carriers of antimicrobial-resistant organisms (AMROs) in hospitals, out in @natcomms.nature.com. We combine patient mobility, clinical cultures, EHR, and genomics to identify hidden AMRO carriers. #AMR #HAI #HospitalEpi Link π rdcu.be/eQKKF 1/
A super interesting study on how ants alter their nest networks to prevent epidemics! Network topology metrics were used to measure the effect on disease transmission. www.science.org/doi/full/10....
Our group is presenting at the MIDAS Network Annual Meeting! I will present on reconstructing the early spatial spread of pandemics in the US. Dr. Qing Yao will discuss the use of GNN to predict adaptive mobility for improving epidemic forecasts. Welcome to join us! @midas-network.bsky.social