Błażej Banaszewski

Błażej Banaszewski

@blazejba.bsky.social

Programming biology and chemistry | @ MPI of Biochemistry | ex-Graphcore

20 followers76 following5 posts

Błażej Banaszewski reposted

First preprint from the lab, design & control your protein's amino acid, mRNA and DNA sequences all at once; driven by @blazejba.bsky.social and @ldornfeld.bsky.social, in great collaboration with Dexiong Chen and Karsten Borgwardt.

Lars Dornfeld@ldornfeld.bsky.social

Our paper, “Joint protein, mRNA and DNA sequence design and optimization with nucleotide-level Potts models,” has been accepted at NeurIPS 2026 and is now available on bioRxiv! Preprint: www.biorxiv.org/content/10.6... Code: github.com/blazejba/NuC... 1/11

Błażej Banaszewski reposted

Open PhD positions at the brand new interdisciplinary doctorate school at Max Planck Institute, led by Karsten Borgwardt. It's a condensation of talent and resources. A place to be if you want to make an impact at the intersection of AI and life sciences. www.maxplanckschools.org/572149/biome...

maxplanckschools.orgMax Planck School of Biomedical Artificial IntelligenceThe Max Planck School of Biomedical Artificial Intelligence led by Karsten Borgwardt from the Max Planck Institute for Biochemistry aims to explore key scientific questions at the intersection of biom...

Monroe combines multi-task pretraining on PM6 + PCBA (>1,000 tasks) with explicit stereochemistry and conformer denoising. Across data regimes, OOD splits, and the Polaris and MoleculeACE benchmarks, it is best or statistically tied for best on every task.

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