Elias Dohmen

Elias Dohmen

@drdomain.bsky.social

https://edohmen.github.io Bioinformatician @Gerhard-Domagk-Institute of Pathology - University Hospital Münster From Evolutionary Biology through all OMICS to Biomedicine and Molecular Pathology...

116 followers182 following14 posts

Elias Dohmen reposted

📣 The position of #ELIXIR Director is open for applications! Apply now if you are a #lifesciences specialist with experience in #bioinformatics and will bring awareness of the needs of bioscience data users in both academia and industry. Apply by 10 August 🗓️ https://loom.ly/UpAh6aI

Elias Dohmen reposted

🚨 Postdoc Opportunity as part of DFG Research Training Group "GönomiX" at the University of Göttingen! ​We are seeking a bioinformatician/scientist to study cross-species comparison of Gene Regulatory Networks using our "Göttingen Zoo" of emerging model systems. #GoenomiX @bucherlab.bsky.social

🚀We’re excited to share our new paper in Bioinformatics! We introduce a user-friendly toolkit that implements our novel DeNoFo file-format for standardised annotation of de novo gene detection workflows — enabling reproducible methodology descriptions and easier dataset comparison across studies.

Elias Dohmen reposted

BIG ANNOUNCEMENT📣: I haven’t been this excited to be part of something new in 15 years… Thrilled to reveal the passion project I’ve been working on for the past year and a half!🙀🥳 (thread 👇)

Elias Dohmen reposted

I’ll be advertising a post-doc position (up to 3 year) soon. It will be for somebody that is a good programmer, interested in evolution & is keen to learn new machine learning & AI approaches. I don’t have a link to a job advertisement yet. The post will be hybrid working and based at U of Liverpool

Going into my last week @uni-muenster.de and was really happy to have a final meeting with so many awesome people from @gevol.bsky.social . Good luck to all of you for your second phase projects, a great time and hopefully I'm crossing paths with some of you in the future! ☺️

SPP 2349 Gevol @gevol.bsky.social

Many thanks to all GEvol members for a truly wonderful annual meeting. It was really great to catch up with you all again.

Elias Dohmen reposted

Only 10 days left to apply: We are searching for a senior postdoc (3 +3 years) in the field of theoretical ecology and evolution. The position provides the opportunity to closely interact with experimentalists and develop own research projects. Please RT. Details 👇: shorturl.at/iiiOv

Elias Dohmen reposted

Robert Waterhouse at #ESEB2025 - PIs/Profs please give your students a break when they're doing orthology, ancestral state reconstruction, gene/species tree reconciliation work - it's not an overnight process, there are no push-button tools, and fast doesn't equal correct! Love this :-)

Elias Dohmen reposted

I am excited to announce that the position of a senior postdoc (3 +3 years) in the field of theoretical biology is available in my group. The position provides the opportunity to closely interact with experimentalists and develop own research projects. Please RT. Details 👇: shorturl.at/iiiOv

shorturl.at116 FB 5 Research Assistant (m/f/d) field of Theoretical Ecology and Evolution or Computational Biology: Uni Osnabrück

🚨 New preprint alert! 🚨 🔬 Ever wondered how new genes emerge from scratch? Meet DESwoMAN, a fully automated pipeline to detect and analyze newly expressed ORFs (neORFs) from transcriptome data — giving us a window into the earliest stages of de novo gene emergence! (Thread 🧵👇)

Elias Dohmen reposted

Recently I developed several Snakemake workflows for tasks related to Cactus and HAL files, including whole genome alignment and pangenome inference. The goal was to perform these tasks efficiently on SLURM-based (or possibly other) clusters. I hope they are useful! github.com/harvardinfor...

github.comGitHub - harvardinformatics/cactus-snakemake: Snakemake workflows for performing whole genome alignment with Cactus efficiently on SLURM clustersSnakemake workflows for performing whole genome alignment with Cactus efficiently on SLURM clusters - harvardinformatics/cactus-snakemake

Elias Dohmen reposted

YUP. Made an error in the very first post. Correct link is: github.com/mol-evol/gcua

github.comGitHub - mol-evol/gcua: GCUA - General Codon Usage Analysis (v2.0)GCUA - General Codon Usage Analysis (v2.0). Contribute to mol-evol/gcua development by creating an account on GitHub.
James McInerney@jomcinerney.bsky.social

Thread: Introducing GCUA v2.0 (General Codon Usage Analysis) - a Python tool for analysing codon usage patterns in DNA sequences! Originally developed in 1998, now completely rewritten with modern features. Let me walk you through what I like about this version (PLS RT) github.com/mol-evol/gcu...

Elias Dohmen reposted

Elias Dohmen reposted

Elias Dohmen reposted

🎓 #PhD in Evolutionary Ecology @UniBayreuth 🇩🇪 Parental care vs microbe communities in burying beetles 🪲🧫 ERC-funded | 3 years | behavioral ecology & metabarcoding Details: tinyurl.com/CareVsMicrobes Apply by May 16, start in September #AcademicSky #Microbiome #SocialEvolution #Insects

Elias Dohmen reposted

Do you use Darwin Tree of Life (DToL) genomes for your work or grant applications? If so, can you please fill out this form? docs.google.com/forms/d/e/1F... We are gathering info on how DToL genomes are used. It will help us raise money to continue producing publicly available high-quality genomes.

docs.google.comDarwin Tree of Life Impact AssessmentThis form is used to share information within DToL about case studies, ongoing research, and funding awards that demonstrate the impact the Darwin Tree of Life consortium project has had on Global and...

De novo genes research community 🧬 - please consider using for your future or past work our new methodology annotation format for better comparability of studies and higher reproducibility. (1/3)

bioRxiv Bioinfo@biorxiv-bioinfo.bsky.social

DeNoFo: a file format and toolkit for standardised, comparable de novo gene annotation https://www.biorxiv.org/content/10.1101/2025.03.31.644673v1

We collected a lot of feedback from the community and developed not only a standardised, still flexible annotation format, but as well a toolkit to annotate, convert and compare studies in this format in a quick and easy way without reading long papers or manuals beforehand. (2/3)

Elias Dohmen reposted

Dear Blueskye-verse, I have a question: We are about to buy a new 96-well microplate-reader that we want to use for measuring OD and fluorescence in long-term-cultivation experiments inside the platereader (to e.g. measure growth rate). Which instruments/ brand can you recommend?

Elias Dohmen reposted

🧪📣Course alert!📣🧪 Applications are open for the new edition of the @EMBO.org course on Genome assembly and downstream analysis in Florence 🇮🇹. We can’t wait to welcome a new group of participants after the success of🇧🇪 & 🇪🇸 editions. 🗓️ Apply by May 31. 🧪🧬🖥️ #EMBOgenomeSeq #ScienceTraining

meetings.embo.orgGenome sequencing, assembly, curation, and downstream analysesAdvances in long-read sequencing methods such as Pacific Biosciences (PacBio) and Oxford Nanopore Technologies (ONT) and scaffolding approaches using chromosome conformation capture have significantl…

Elias Dohmen reposted