E11 Bio

We welcome Paloma Rueda Romero as Operations Lead! Paloma comes with extensive project management and operations experience at various biotechs including Zymergen, Andes, and Windfall Bio. Paloma has scaled organizations and is now helping us scale our team and technology.

We are co-hosting East Bay Neurotech Mixer on Sept 17th in Alameda! luma.com/bpk7tj30

📢 We're hiring a Scientist/Senior Scientist in Molecular Engineering & Sample Optimization at E11 Bio. If you feel equally at home at the bench, the microscope, and in quantitative data analysis, come help us map mammalian brains. jobs.lever.co/convergentre...

Earlier this year we expanded our operations team with Becca Arruda and Phoebe Wong! Becca comes to us from Janelia and the King lab at UC Berkeley with experience as a scientist and lab manager. Phoebe supports day-to-day operations in the lab and office, having previously ran retail stores.

We welcome Robinson Meng as Molecular Biology Assistant to the E11 team! He graduated from U of Toronto, where he worked in the Nagy Lab developing molecular engineering platforms for regenerative and cellular therapeutics. He was also Co-Chair of BioTEC and the Finance Lead for UofT's iGEM team.

E11 Bio is a finalist in the BRAIN Initiative's photo & video contest. Help vote for us! www.2026brainconference.com/event/44a17f...

We welcome @john-haug.bsky.social to the E11 Team! John received his PhD in EE from the U of Notre Dame on super-resolution imaging techniques and did his postdoc at UT Southwestern Medical Center in Kevin Dean’s lab, where he worked with advanced microscope systems.

Last week we hosted our largest neuro event yet at Deep Tech Week! Neuro is heating up with large philanthropic and venture investments into next generation brain-computer interfaces, biohybrids, and neuro-inspired AI!

We welcome Madelynn Isbrecht to the @E11BIO team as Research Associate! Madelynn earned her BS in Neuroscience from University of Michigan, where she worked in Dawen Cai's lab on tissue clearing, hydrogels, immunostaining, and advanced microscopy.

Welcoming Jeff Rhoades to the team as our newest Machine Learning Scientist! Jeff did his PhD at Harvard studying cerebellar circuits using electron microscopy and ML–based segmentation. He contributed to the connectome of the mouse cerebellar cortex and then joined Janelia on the CellMap project.

We'll be at Booth 4015 in the non-profit section all #sfn2025 #sfn25 Come chat about using our next-generate circuit mapping tool for your research!

The E11 Bio team is headed to Society for Neuroscience #Sfn2025! Come talk circuit mapping, protein barcodes, expansion microscopy, and optical connectomics at our booth (#4015) and posters! More info: e11.bio/sfn Ask us about our reception!

E11 is thrilled to welcome Will Patton as our newest Machine Learning Scientist!! Before E11, Will worked at Janelia and contributed significantly to gunpowder, daisy and volara, three libraries that simplify training and application of machine learning to large microscopy volumes Welcome, Will!

Thanks to AWS for hosting our data sets as described in their blog post: aws.amazon.com/blogs/public...

Proud of @e11bio.bsky.social's early progress here, and excited for so much more to come (that I've seen previews of as a FRO board member 😍). Optics + expansion + barcoding + AI + molecules = beginning of infinity for scalable brain circuit mapping, with wide implications across science.

All the DNA from our preprint is available on @addgene.bsky.social!

E11 Bio is excited to unveil PRISM technology for mapping brain wiring with simple light microscopes. Today, brain mapping in humans and other mammals is bottlenecked by accurate neuron tracing. PRISM uses molecular ID codes and AI to help neurons trace themselves. Read more: e11.bio/blog/prism

E11 is hiring a machine learning scientist to automate spatial reconstruction using our petabyte-scale microscopy data. Help us build the tools that will make neuronal mapping a reality and change the way we think about the brain. lnkd.in/gxf_a4AB

E11 Bio is seeking a creative and passionate spatial ‘omics scientist to co-develop next-generation technology for high-throughput barcoded connectomic imaging. Organized as a non-profit but operating like a startup, E11 is pursuing ambitious neuroscience to benefit society. lnkd.in/gRHERZwZ

E11 seeks a research associate with experience in fluorescence microscopy and tissue sectioning for our sample processing team. Work at a Focused Research Organization with great people, solid benefits, and tons of energy to complete the first mammalian connectome. jobs.lever.co/convergentre...

How to make frontier AI models safer and accelerate drug discovery with the connectome. We are featured in this @ifp.bsky.social article by @adammarblestone.bsky.social & @andrewcpayne.bsky.social ifp.org/mapping-the-...

E11 welcomes Michelle Wu to our brain mapping team! Michelle just finished her BASc in Biomedical Engineering at University of Toronto. Her research experience includes UofT, the Broad Institute of MIT and Harvard, and a previous year with us at E11. We're super excited to have her back.

This week we’re thrilled to welcome Victor Holmes to the E11 team as our new Chief of Staff! Victor brings deep experience in scientific operations, project strategy, and team management. He’ll help build the connective tissue that supports our progress toward mammalian connectomics. Welcome!

This summer we welcome Julia Lyudchik and Jakob Troidl to the team! Julia got her PhD at ISTA developing light microscopy visualization and reconstruction methods: LIONESS, CATS & LICONN. Jakob is a PhD candidate at Harvard University interested in data visualization and applied machine learning.

We're excited to welcome Jeff Chen and JinYoung Lee to the team! 🎉 Both are University of Toronto undergrads joining us for a gap year. Jeff will work on barcode design and viral payloads, while JinYoung will focus on expansion microscopy and imaging.

"Academic research groups and startups are essential drivers of scientific progress. But some projects, like the Hubble Space Telescope or the Human Genome Project, are too big for any one academic lab or loose consortium..."

✨E11 Bio is hiring a Chief of Staff / Project Manager! This unique role blends scientific project management with day-to-day operations—and gives you a front-row seat and bird’s-eye view as we advance the field of connectomics toward mammalian brains. Job posting: jobs.lever.co/convergentre...

Our work in connectomics is featured in @asimovpress.bsky.social! We’re building new tools to map the brain with greater precision and scale!

We're hiring! Join our team as an Image Data Scientist and help create stunning and impactful connectomic datasets! 🧠✨

🧪 E11 Bio is excited to share a major step towards brain mapping at 100x lower cost, making whole-brain connectomics at human & mouse scale feasible (🧠→🔬→💻). Critical for curing brain disorders, building human-like AI systems, and even simulating human brains. Read more: e11.bio/news/roadmap