Happy to share EVBC Newsletter No. 105 for September 2026, including: ๐ Upcoming events + deadlines ๐จ Info on ViBioM 2027 in Jena: 9-11 March ๐ผ Job vacancies ๐ป Webinar announcements ๐ evbc.uni-jena.de/evbc-newslet... #bioinformatics #virology #sciencecommunity
European Virus Bioinformatics Center
European Virus Bioinformatics Center
@evbc.bsky.social
Bringing together the excellence of virology and bioinformatics. Tools: http://bit.ly/evbctools Impressum: https://evbc.uni-jena.de/impressum/
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๐ขJoin us for the next ECR #Viromics Webinar: A Mysteriuos Outbreak in Dobermann dogs: Metagenomic Detection of Raccoon Dog and Fox Amdoparvovirus โ๐๏ธ Vladimir Gajdov, Scientific Veterinary Institute Novi Sad, Serbia ๐๏ธ14 Oct, 4 PM CEST ๐Zoom (register for login info) ๐ evbc.uni-jena.de/events/ecr-v...
A global workshop report calls for adaptable, non-stigmatising systems that combine virus genomes, phenotypes and #epidemiology to track lineages and strengthen outbreak response ๐๐ฆ #Virology #BVBRC, #CDC, #NCBI #NIAID ๐ https://doi.org/10.1128/jvi.00210-26 ๐ค EVBC: Elliot J. Lefkowitz
A global panel of henipavirus and parahenipavirus glycoproteins reveals structural diversity, cross-reactive epitopes and foundations for broadly reactive Nipah virus countermeasures ๐ฆ ๐งฌ #Henipavirus #NipahVirus ๐ https://doi.org/10.1038/s41467-026-74212-8 ๐ค EVBC member: Robert J. Edwards
Study presents #virus-mimicking artificial positive controls as #epidemiological approach for identifying & tracking virus infections, highlighting the value of robust lab methods for surveillance & public-health response๐ฆ ๐ฌ ๐ https://doi.org/10.1016/j.jviromet.2026.115434 ๐ค EVBC: Bolaji Osundahunsi
Metagenomics of three rural #groundwater pumps in Egypt recovered 9,534 virus contigs, revealing site-specific viromes dominated by novel bacteriophages with potential roles in microbial ecology and metabolism ๐งฌ๐ง #Viromics ๐ https://doi.org/10.1007/s00248-026-02818-y ๐ค EVBC member: Ali Elbehery
New protocol combines sequence homology, protein structures, genome synteny & protein language models to annotate metagenomic prokaryotic viruses. Pharokka, Phold and Phynteny help uncover viral dark matter and visualise genome features๐ฆ ๐ฌ ๐ https://doi.org/10.1002/cpz1.70405 ๐คEVBC: Robert J. Edwards
How can an unknown #bacteriophage be classified? A new guide presents 10 practical tips, covering genome quality, taxonomic tools, similarity searches, phylogenetics, protein structure, host range and ecology. ๐ฆ ๐ฌ #Virologyย ๐ https://doi.org/10.1371/journal.pcbi.1014403 ๐ค EVBC member: Colin Hill
RNA #VirusDiscovery gets a boost with RdRpCATCH, a unified framework combining multiple profile HMM resources to detect and taxonomically annotate #RNA viruses in (meta)transcriptomic data.๐ฆ ๐ ๐ https://doi.org/10.1093/nargab/lqag076 ๐ค EVBC: U. Neri, I. Olendraite, J. Charon, S. Sakaguchi, A. Kupczok
A review traces #VirusDiscovery from classical assays to metagenomics and AI, highlighting protein-structure comparison as a promising route beyond sequence similarity and viral dark matter ๐งฌ๐ค #Viromics ๐ https://doi.org/10.1099/mgen.0.001785 ๐ค EVBC: Amanda Araujo Serrao de Andrade, Ann C. Gregory
A new review links virus sequence evolution, protein structure and serology to improve the prediction of immune escape and antigenic change in influenza and SARS-CoV-2 ๐งฌ๐ฆ #VirusEvolution #Vaccines ๐ https://doi.org/10.1128/jvi.01687-25 ๐ค EVBC members: Spyros Lytras, Jumpei Ito
New tool ConvMut maps recurring SARS-CoV-2 mutations across PANGO-based phylogenies, helping researchers track immune escape and inform vaccine and antibody design ๐งฌ๐ฆ #SARSCoV2 #VirusEvolution #GenomicSurveillanceย ๐ https://doi.org/10.3390/v18070724 ๐ค EVBC member: Cesare Gruber
AI structure prediction is opening a new window onto deep virus evolution, helping classify viral dark matter, infer protein function and develop structural phylogenies ๐งฌ๐ค #VirusEvolution #AI ๐ https://doi.org/10.1146/annurev-virology-100424-122154 ๐ค EVBC member: Spyros Lytras
Herpesvirus mRNAs consistently carry longer poly(A) tails than host and other virus transcripts, suggesting a widespread strategy that may enhance virus gene expression ๐งฌ๐ฆ #Herpesvirus #RNA #MolecularVirology ๐ https://doi.org/10.1371/journal.ppat.1014341 ๐ค EVBC member: Daniel Depledge
Nonstandard virus genomes with structural rearrangements can shape virus ecology and evolution, influencing transmission, host range and adaptation. ๐งฌ๐ฆ #VirusEvolution #Virology ๐ https://doi.org/10.1016/j.coviro.2026.101567 ๐ค EVBC members: Santiago F Elena , Julia Hillung
#Phages reprogramme infected cells through more than auxiliary metabolic genes. Review highlights phage-encoded transcription and sigma factors as powerful, understudied tools shaping host physiology and ecosystem processes. ๐ฆ ๐ฌ ๐ https://doi.org/10.1016/j.tim.2026.05.019 ๐ค EVBC: Matthew B. Sullivan
A benchmark shows that sequence-search tool choice changes recall, runtime and resource use in #CRISPR spacerโprotospacer detection. Bowtie1 with โค3 mismatches offers a practical balance for large-scale hostโMGE analyses ๐งฌ ๐ https://doi.org/10.1093/bioinformatics/btag394 ๐ค EVBC: Uri Neri, Simon Roux
An adapted AlphaFold2-Multimer workflow predicts both pre- and postfusion conformations of class I virus fusion proteins, supporting structure-based epitope mapping and vaccine design ๐งฌ๐ค #AlphaFold #VaccineDesign ๐ https://doi.org/10.1371/journal.pone.0351662 ๐ค EVBC: Clara Schoeder, Jens Meiler
A new study presents VirBench and gget virus, a deterministic tool for reproducible virus sequence retrieval. It raised AI-agent accuracy to โฅ90% and reduced representative data transfer by 98% ๐งฌ๐ค #VirusGenomics #AI ๐ https://doi.org/10.48550/arXiv.2606.06749 ๐ค EVBC: Bernhard Renard, Laura Luebbert
๐ขJoin us for the next ECR #Viromics Webinar "Build-A-Vir Workshop: Different bio-fractionation methods select for unique DNA and RNA viruses in experimental grassland system" โ๐๏ธ Josuรฉ Rodrรญguez-Ramos, PNNL, USA ๐๏ธ 9 Sep, 4 PM CEST ๐ Zoom (register for login details) ๐ evbc.uni-jena.de/events/ecr-v...
A scalable RB-TnSeq screen identifies 42 genes required for infection by 25 Klebsiella phages, revealing conserved and phage-specific requirements and informing phage host-range prediction and cocktail design. ๐ฆ ๐ doi.org/10.1371/jour... ๐ค EVBC member: Matthew B. Sullivan
Happy to share EVBC Newsletter No. 104 (July/August 2026), including: ๐ Newest EVBC member publications + tools ๐ Upcoming events + deadlines ๐ผ Job vacancies ๐ evbc.uni-jena.de/evbc-newslet... #bioinformatics #virology #sciencecommunity
European Virus Bioinformatics Center reposted
๐ขJoin us for the next ECR #Viromics Webinar "Understanding the viral composition and the dynamic phage-bacterial interplay in Idiopathic nephrotic syndrome" โ๐๏ธ Eman W. Abdelsalam, Sidra Medicine, Qatar ๐๏ธ 12 Aug 2026, 4 PM CEST ๐ Zoom (register for login details) ๐ evbc.uni-jena.de/events/ecr-v...
European Virus Bioinformatics Center reposted
Me, @emma-harding.bsky.social, @rtarlinton.bsky.social and @royalsociety.org are organising a meeting on endogenous viral elements! 8-9 Feb 2027, Birmingham UK. 2 whole days of EVEs! Many amazing researchers already agreed to speak. Invites: shorturl.at/jp9sh Provisional schedule: shorturl.at/8O5KV
๐ขJoin us for the next ECR #Viromics Webinar "Understanding the viral composition and the dynamic phage-bacterial interplay in Idiopathic nephrotic syndrome" โ๐๏ธ Eman W. Abdelsalam, Sidra Medicine, Qatar ๐๏ธ 12 Aug 2026, 4 PM CEST ๐ Zoom (register for login details) ๐ evbc.uni-jena.de/events/ecr-v...
Dense JCV genome sequencing reveals long-term circulation in North America and shows how mosquito life cycles shape #VirusEvolution and spread ๐ฆ๐งฌ๐ #Phylogenetics #VectorBorneDisease ๐ https://doi.org/10.1016/j.cub.2026.03.076 ๐ค EVBC: Simon Dellicour, Philippe Lemey, Marc A. Suchard, Nathan Grubaugh
Wastewater sequencing combined with #MachingeLearning enables learning and forecasting of SARS-CoV-2 variant selection dynamics via the Covvfit framework. ๐งฌ๐๐ #WastewaterEpidemiology #SARSCoV2 ๐ https://doi.org/10.1016/j.watres.2026.126018 ๐ค EVBC member: Niko Beerenwinkel
European Virus Bioinformatics Center reposted
๐จVIROMICS WORKSHOP 2026๐จ Application is now OPEN for the 8th International Viromics Workshop, Oct. 14-16, 2026, in-person at Ohio State University. Application closes Aug. 7. Apply: forms.gle/pJFLDCNEBvAe... Full details: u.osu.edu/viruslab/vir... #viromics #viruses #ecology #workshop
This comprehensive review synthesises current knowledge on the infection cycles of #Nucleocytoviricota (giant DNA viruses), highlighting shared mechanisms and lineage-specific innovations across diverse #virus families. ๐ฆ ๐ฌ ๐ https://doi.org/10.1038/s41579-026-01319-6 ๐ค EVBC member: Mart Krupovic
Large-scale analysis of #LassaVirus sequences reveals lineage-specific biophysical features and delivers comprehensive #glycoprotein structure catalogue, supporting vaccine and therapeutic development๐ฆ ๐งฌ ๐ https://doi.org/10.1038/s44298-026-00196-3 ๐ค EVBC: Knut Reinert, Clara Schoeder, Denise Kรผhnert
New microfluidic GP confocal imaging protocol enables precise quantification of lipid packing in GUVs, improving membrane order measurements. ๐งซ๐ฌ๐ #Microscopy #Lipids #Microfluidics ๐ doi.org/10.1016/j.xp... ๐ค EVBC member: Christian Eggeling
Structure-based prediction of #phage proteins (Phage Homomer Level Estimate and Generation Method PHLEGM) uses #AlphaFold Multimer and interface scoring to resolve thousands of virus protein complexes from sequence data๐งฌ๐ป #StructuralBiology ๐ doi.org/10.64898/202... ๐คEVBC: Robert Edwards, Bas Dutilh
Parallelised structured coalescent inference dramatically accelerates real-time phylogeography, enabling scalable epidemic reconstruction across many regions and genomes ๐งฌ๐โก #Phylogenetics #Epidemiology #Bioinformatics ๐ https://doi.org/10.1073/pnas.2602412123 ๐ค EVBC member: Marc A. Suchard
Event-triggered #MINFLUX #microscopy couples real-time confocal analysis with adaptive nanoscale imaging, enabling targeted capture of rare cellular events in 2D and 3D, such as during HIV-1 budding site formation ๐ฆ ๐ฌโก#CellBiology ๐ https://doi.org/10.1038/s41467-026-73176-z ๐คEVBC: Christian Eggeling
A new open-access catalogue brings together all known human-infective RNA viruses, providing a valuable resource for virology, surveillance, and pandemic preparedness. ๐ฆ ๐ #Virology #InfectiousDiseases #OpenData ๐ https://doi.org/10.1038/s41597-026-07281-5 ๐ค EVBC member: Liam Brierley
Rfam database and R2DT workflows enable automated virus ncRNA annotation and API-driven retrieval of RNA families, alignments and structures for scalable RNA biology pipelines ๐งฌ๐งซ๐ #RNA #Virology #Bioinformatics ๐ https://doi.org/10.64898/2026.05.10.724034 ๐ค EVBC members: Sandra Triebel, Manja Marz
Review summarises how viruses dominate genetic diversity on Earth and evolve through multiple origins, gene sharing, and hostโvirus arms races, reshaping the global virosphere and replicator space ๐งฌ๐๐ฆ #Virology #Evolution #Metagenomics ๐ doi.org/10.5802/crbi... ๐ค EVBC member: Mart Krupovic
European Virus Bioinformatics Center reposted
๐ข Join us for the next Viruses in silico webinar lecture! ๐๏ธ "The ICTV at Sixty Years: Classifying the Worldwide Virosphere" ๐จโ๐ฌ Elliot J. Lefkowitz (University of Alabama at Birmingham, US) ๐๏ธ 25 June 2026 ๐ 4 PM CEST ๐ Zoom - Register to receive the login details ๐ evbc.uni-jena.de/events/virus...
A new Nextflow-based pipeline enables scalable reconstruction and analysis of virus genomes from #metagenomic sequencing data, supporting improved #VirusSurveillance and outbreak response. ๐งฌ๐ฆ #Bioinformatics ๐ https://doi.org/10.1093/bioinformatics/btag187 ๐ค EVBC members: Philippe Lemey, Magda Bletsa
#MachineLearning augmented #Raman spectroscopy enables accurate quantification of components in model #vaccine formulations, improving spectral deconvolution and compositional analysis in complex biological mixtures. ๐งช๐๐ฌ ๐ https://doi.org/10.1021/acs.analchem.5c05538 ๐ค EVBC member: Christel Kamp
Researchers have created the first comprehensive catalogue of #bacteriophages in the honey bee gut #microbiome, providing new insights into #BeeHealth, microbial ecology and hostโvirus interactions. ๐๐ฆ ๐ https://doi.org/10.1038/s41467-026-72757-2 ๐ค EVBC members: Nikolas Basler, Jelle Matthijnssens
Happy to share EVBC Newsletter No. 103 (May/June 2026), including: ๐ Newest EVBC member publications + tools ๐ Upcoming events + deadlines ๐ผ Open vacancies ๐ค Webinar announcements ๐ https://evbc.uni-jena.de/evbc-newsletter/ #bioinformatics #virology #sciencecommunity
European Virus Bioinformatics Center reposted
A recent The New York Times article on treatment advances for the Bundibugyo #Ebola outbreak follows GVN's June 10 media briefing featuring Prof. Jean-Jacques Muyembe, Ebola research expert and Director of INRB. Read the article: https://ow.ly/rlTi50ZblRe #GlobalVirusNetwork #GVN #Ebola
๐ข Join us for the next Viruses in silico webinar lecture! ๐๏ธ "The ICTV at Sixty Years: Classifying the Worldwide Virosphere" ๐จโ๐ฌ Elliot J. Lefkowitz (University of Alabama at Birmingham, US) ๐๏ธ 25 June 2026 ๐ 4 PM CEST ๐ Zoom - Register to receive the login details ๐ evbc.uni-jena.de/events/virus...
๐ขJoin us for the next ECR #Viromics Webinar "Discovery of putative active and cryptic viral infections in prevalent gut fungi" โ๐๏ธ Andrea Silverj, University of Calgary, Canada ๐๏ธ 10 June 2026, 4 PM CEST ๐ Online/Zoom (register for login details) ๐ evbc.uni-jena.de/events/ecr-v...
We had an amazing time at #ViBioM2026 last week in Vilnius ๐ฑ๐น๐ค Researchers from around the world shared insights on virus #metagenomics, #phylogeny, protein & RNA biology, and #ML approaches. Huge thanks to all organizers, helpers, and our sponsors (GoVilnius, Viruses/MDPI,ย @febsopenbio.bsky.social)!
Nuoลกirdลพiai sveiki atvykฤ! #ViBioM2026 is underway in Vilnius!๐๐ฑ๐น It's great to see participants arriving and connecting at todayโs welcome get-together ๐ค๐บย Excited for the days ahead, filled with talks, posters, and discussions across #virology and #bioinformatics ๐งฌ๐ปย #researchcommunity