Frederic Lemoine

Accounting for Defective Viral Genomes in viral consensus genome reconstruction, application to influenza virus https://www.biorxiv.org/content/10.64898/2026.03.11.711002v1

Le Monde se fait l'écho de l'activité du Réseau de recherche reproductible, que nous finançons dans le cadre de la politique de science ouverte. Intéressant de voir que ces sujets peuvent être exposés un large public.

🔬♻️ « Quand la science s’amuse à se reproduire » Merci à @lemonde.fr et à David Larousserie pour la mise en lumière des #ReplicationGames du 3 octobre, co-organisés par le Réseau Français de la Recherche Reproductible et @i4replication.bsky.social.

👏 Many thanks to everyone who took part in the Replication Games on Friday, October 3rd! 6 teams joined the challenge, 5 in person and 1 online, bringing curiosity and collaboration to every step and making this event a truly inspiring collective experience around reproducibility & open science.

www.youtube.com/watch?v=hMH1... I am very thankful to the @ec.europa.eu for highlighting my research at @institutpasteur.bsky.social . It is a privilege for me to have the opportunity of developing my professional life here.

Nouveau Cours Pasteur - Pandemics: Origins and Response 📍Institut Pasteur, Paris 📆Du 19 au 30/01/2026 🗣️En anglais ⏳Inscriptions ouvertes jusqu’au 31/10/2025 Un cours pour comprendre les facteurs d’émergence, les dynamiques de propagation, et tirer des leçons des précédentes crises sanitaires.

PhyML now implements the Bayesian phylogenetic bootstrap (academic.oup.com/mbe/article/...)! To test it: option "--bayesian_bootstrap" with the latest commits of PhyML: github.com/stephaneguin... Example: `phyml -d nt -i align.phy -m GTR -b 100 --bayesian_bootstrap`

Registration is now open! The 580€ include housing and all meals. We will close on October 17th or when reaching 80 participants.

I will be recruiting new postdocs with start dates end 2025 - early 2026. If you'd like to work at the Pasteur Institute in the heart of Paris surrounded by amazing scientists, reach out to discuss possible projects on SynBio / Bacterial Immunity!

Henrik Kaessmann @kaessmannlab.bsky.social taking us on an amazing journey to the origins and evolution of the vertebrate brain at #ECCN2025 @borrell-lab.bsky.social @r3rt0.bsky.social @zoltan-molnar.bsky.social

Pour ou contre l'IA? "Ne pas confondre recherche et précipitation", par @chtruchet.bsky.social dans @maglarecherche.bsky.social www.larecherche.fr/intelligence...

We are hiring an RE in Bioinfo and Biostats for the COPAFLICT project! It seeks to improve knowledge of viral hemorrhagic fevers and offer new perspectives for their diagnosis and treatment. Come and work with us at the Hub in @institutpasteur.bsky.social ! See: hub-jobs2025.pasteur.cloud

We're hiring! Join the Hub of Bioinformatics and Biostatistics at @pasteur.fr as the Head of the "Algorithmics, AI, and Mathematical Modeling" pole. 🧬💻 Apply now: hub-jobs2025.pasteur.cloud #Bioinformatics #ScienceJobs

Publications scientifiques : alerte tsunami youtu.be/QPPbsqcZ4Ew

Colloque annuel du Réseau français de la recherche reproductible à Lyon openscience.pasteur.fr/2025/01/27/l... via le Centre de Ressources en Information Scientifique (CeRIS) @pasteur.fr

Our Primer Methods session continue! This morning @bonomimax.bsky.social will talk about Bayesian inference in integrative structural biology, presenting theory and applications where different types of experimental data have to be combined to obtain accurate structural models of biological systems

"Highly recurrent multi-nucleotide mutations in SARS-CoV-2" by 0Nicola De Maio, Kyle Smith, Yatish Turakhia, and Nick Goldman www.biorxiv.org/content/10.1...

A new Primer Method today: Sebastien Duchene will present Bayesian phylodynamic models, discussing the prior distributions of key parameters, and the extent to which they can impact downstream inferences of the evolutionary dynamics of organisms.