Johannes Rainer

🚨 #PostDoc opportunity in Computational Biology! - large-scale #MassSpectrometry #Proteomics data analysis - statistical multi-omics data analysis - #rstats and/or #Python - ⏲️ 3 year position - 📍 Bolzano, Italy 🇮🇹 - great work/life balance (🏔️) Work with us 👐! 🔗 details: bit.ly/4sbSvHY

After 6 years stepping down from the @bioconductor.bsky.social Community Advisory Board. Sad 😢, but it was such a nice experience and I really had the feeling to be part of a community and to contribute. Thanks to all 🙌❤️! Maybe re-running in a couple of years, could well be that "I'll be back 😎"

The up-and-coming default infrastructure for chromatographic mass spectrometry data in @bioconductor.bsky.social / #rstats 💪 great work @philouail.bsky.social !

Chromatograms is out in Analytical Chemistry! Chromatographic data in R, in memory, on disk or computed on demand, now part of xcms and tested on 4,000+ LC-MS files. Thanks to my amazing co-authors and specifically @jorainer.bsky.social doi.org/10.1021/acs.... #RStats #Bioconductor #MassSpec

🎉 Introducing the Bioconductor Student-ECR Council! The Council will support students and ECRs with mentorship, networking, professional development & opportunities to contribute to Bioconductor. Learn more: bit.ly/4giOlJ1 Interested in joining? Connect on Zulip: bit.ly/4yYVxT0

Our RmzTabM package is now included in @bioconductor.bsky.social (devel version)! ℹ️ core #rstats API for the HUPO-PSI mzTab-M 2.1 standard for reporting #metabolomics and #lipidomics results. 🙏 Gabriele Tomè, @philouail.bsky.social + mzTab-M working group! 🔗https://bit.ly/3RLHIGN

For those not at @bioconductor.bsky.social #EuroBioc2026 : our workflow for 🔀 interactive and reproducible combined #rstats + 🐍 #Python #MassSpectrometry data analysis is available here: jorainer.github.io/SpectriPyWor...

What an amazing few days in Turku at #EuroBioC2026! 🇫🇮 This year's conference brought together 147 participants from 23 countries, showcasing the diversity of the Bioconductor community. A huge thank you to everyone who made EuroBioC2026 memorable. See you in Basel for EuroBioC2027!

Today @philouail.bsky.social received the Open Research Award from Eurac Research for her contributions to open and collaborative #metabolomics . Very well deserved! 💪🥳 #proudPI

🚀 Registration is OPEN for the de.NBI Summer School 2026 - Bioinformatics for Proteomics! 🧬 🙌 Fully Supported: There are no fees for the event and we will provide accommodation and local travel tickets for the selected candidates 📅 7-11 September 📍 Bochum, Germany 🔗 www.denbi.de/training-cou...

We have a 3-years position open in our facility. Come join us to do great science in a nice team! jobs.unibas.ch/offene-stell...

🎉 Speaker Reveal – EuroBioC 2026 We’re excited to announce Dr Aura Raulo as a keynote speaker at EuroBioC2026! 🚨Have work to share? Abstract submission is open! Submit here: openreview.net/group?id=bio... Learn more about EuroBioC2026 here: eurobioc2026.bioconductor.org #EuroBioC2026

Registration is now open! See: csama2026.bioconductor.eu/registration...

🔔 The Bioconductor Developers’ Forum is back! This monthly forum is for developers & users to discuss infrastructure, future tools, and community-driven changes. 🗓 When: Last Thursday of every month ⏰ Time: 4pm GMT First session: Feb 26, 2026 More info: bioconductor.org/developers/d...

Registration now open for CSAMA! 📜 csama2026.bioconductor.eu Highly recommend for learning data science with a scenery, plus a fantastic crowd of students and faculty alike! 📸 from the traditional mid-week hike during last year’s edition.

let's get the community rolling 💪! Thanks to Vilhelm Suksi from @antagomir.bsky.social 's group for the contribution of the notame vignette 🙌

🚀 New release: Metabonaut v1.4.0 is here! 1️⃣ New integration with the notame package for robust feature selection. 2️⃣ Added GNPS2 FBMN export for molecular networking. Explore the updates: rformassspectrometry.github.io/Metabonaut/ #Metabolomics #RStats #OpenScience #MassSpec #Bioconductor

Little over a month left to submit an abstract to #EuroBioC2026 (eurobioc2026.bioconductor.org/pages/submis...), which will be held in Turku, Finland. Here are a couple of Finnish Christmas traditions that you might not know:

This year's CSAMA Biological Data Science Summer School in Brixen takes place 24-29 May 2026. Topics: single-cell and spatial omics, statistics, multi-omics, ML/AI, all very hands-on using R / Bioconductor! More info: csama2026.bioconductor.eu Registration: 1 Feb 2026! @bioconductor.bsky.social

and there will also be lectures and workshops for #MassSpectrometry - based #proteomics and #metabolomics analysis in #rstats with @bioconductor.bsky.social 😎

CSAMA 2026 - Biological Data Science Summer School Bressanone-Brixen, South Tyrol / Italy 24-29 May 2026 csama2026.bioconductor.eu Statistical & computational methods for single cell and spatial omics, with lectures and hands-on exercises in R/Bioconductor.

still possible to apply 👇

It's official! The #tidyomics blog is up! 🚀 Here, the introductory post tidyomics.github.io/tidyomicsBlo... This blog aims to publish not only news about our community but also anything related to tidy interfaces, opinions, events, and more. Plz share! 🙏 @bioconductor.bsky.social #rstats

Join EMBL's Interdisciplinary Postdoc Programme! 3 years funding, self-designed interdisciplinary project co-led between EMBL PI and PI in one of EMBL's actual, prospect or associate member states. In particular: AI&Theory, use mathem. models, physics principles and AI www.embl.org/about/info/p...

Representing EuroBioC2026 at the @abacbs.bsky.social Conference this week. The next European @bioconductor.bsky.social Conference will be in Turku, Finland! #ABACBS2025 #EuroBioC2026

🚀 EuroBioC2026 – Call for Abstracts is Now Open! We invite submissions for short talks, posters, and workshops for EuroBioC2026 by Jan 30, 2026. 👉 Submit here: openreview.net/group?id=bio... ⚠️ Note: Register on OpenReview at least two weeks before the abstract deadline to be able to submit.

The Euro Bioc 2026 in Turku is official!

📣 join in my team 🤗! 👇 - #rstats software development - contribute to @bioconductor.bsky.social and @galaxyproject.bsky.social - large-scale #MassSpectrometry #metabolomics and #proteomics data analysis - hiking ⛰️ 📍 Bolzano, 🇮🇹 ⏲️ 3 year position 🔗 full description: bit.ly/4pyXi3V please share

yey! also spotted hackathon co-lead @philouail.bsky.social - I was only virtually attending 😔 - and very likely missed a lot of fun

Happy to announce that also our #SpectriPy package for cross-language #Rstats - #Python #MassSpectrometry data analysis is part of the just released @bioconductor.bsky.social release 3.22 🥳 This was a great collaborative effort! Thanks to all contributors! 💪

🚀 Bioconductor 3.22 is released! Thanks to all developers and community members for contributing to the project! 🔗 Please see the full release announcement here: bioconductor.org/news/bioc_3_...

🧬 EuroBioC2026 is coming to Turku, Finland, from June 3–5, 2026! Expect 3 exciting days with the Bioconductor community, showcasing the latest advances in Bioconductor software and emerging technologies shaping computational biology. 👉 More details soon at eurobioc2026.bioconductor.org

🔬 New in #MassSpectrometry and @jorainer.bsky.social's team! SpectriPy bridges R & Python for data analysis. Breaking language barriers → more flexible & reproducible science. 🚀 🔗bit.ly/48L9yJa #RStats #Python #Bioinformatics #OpenSource

My take: Engineering *is* important. Ideas are cheap. Novelty is overrated. "Hyperparameter tuning" is a cynically dismissive term for something that is in fact the real, difficult problem.

🚀 New on the Bioconductor Blog: GPU Support in Bioconductor Bioconductor is building better support for GPU-accelerated package development for faster and more scalable analysis workflows Learn how package maintainers can leverage this new GPU infrastructure: blog.bioconductor.org/posts/2025-1...

New #HUMAN paper out! 🩸 Our partners from CEMBIO explored blood microsampling (DBS, qDBS, VAMS) for untargeted #lipidomics using high-throughput LC-MS. Volumetric devices show plasma-like precision & recovery! 🔗bit.ly/476qWXw

New #matchms release (0.31)🚀 With functionalities that were on our TODO list for a looooong time: Flash Entropy and BLINK scores! The new "FlashSimilarity" allows computing modified cosine, spectral entropy etc., about 100x faster (or more if you use Linux). #Python #opensource #massspec