Jonathan Taylor

Jonathan Taylor

@jtimaging.bsky.social

Optical physicist tackling biomedical imaging and measurement problems with realtime computation, maths and computational imaging

191 followers129 following65 posts

Cats love sitting in boxes. But a standard-sized @thorlabs.bsky.social Lab Snacks box is too small, surely? My wife reckoned otherwise, and Rowan was game for giving it a go. He's a small cat, but I didn't think he could pull it off. Turns out he's up for trying it once.

Jonathan Taylor reposted

Jonathan Taylor reposted

Jonathan Taylor reposted

I am looking for postdoc candidates for two opportunities in my lab at Lund University. 1. Co-application for a two-year postdoc scholarship on method development in 3D spatial biology, with applications in lung physiology, cancer and neuroscience.

A contactless, integrated transport payment system sounds great until you realise the university is going to demand you provide redacted bank statement downloads as evidence for every £2.40 ticketless bus fare on an expenses claim 🤦

Jonathan Taylor reposted

Sadly, applications to the Advanced Python summer school have dropped significantly over the past 2 years. Plus, there'll be no external funding for the 1st time in *17 years*. Likely all because of GenAI - but programming skills still matter🔥 Deadline May 3, please help by sharing: aspp.school

Good to see this confirmation about the lumenal macrophages that show up in fli1:gfp zebrafish! We see them zipping around the heart in our beating-heart timelapses like this one (credit: Daniel Olesker). They make it harder to see cell division events - how many divisions can you spot here?

Stefan Oehlers@oehlerslab.org

Really cool #zebrafish paper 🧪 from Bart Weijts & Catherine Robin (Hubrecht): starts with the basic question of are those superbright kdrl/fli1a positive cells (that we've all seen in the vascular Tg lines) something special? Yes! They're lumenal macrophages www.nature.com/articles/s41...

Jonathan Taylor reposted

Myself and @immunoah.bsky.social are looking to hire a postdoctoral scientist to build a next-generation high-throughput high-resolution light sheet microscope for imaging entire cleared organs/tissues and to further develop live & fixed tissue clearing methods. www.nature.com/naturecareer...

Interested in instrument development & optical microscopy? Join @immunoah.bsky.social & @jamesdmanton.bsky.social developing high-throughput light sheet microscopy to image entire tissues & progressing tissue clearing methods www.nature.com/naturecareer... Closes 07 APR #PostdocJobs #neuroimmunology

Watch out for the "conference accommodation" scam emails that have been going around for a while. I was rather disconcerted to get one for the upcoming microscopy conference in Sweden that I *am* attending, but am not speaking at (so not even listed anywhere). How on earth could the spammers know…?

Yesterday I learned that MS Teams throttles screen-sharing to ~3fps. To override that, you have to know to press an obscure and inscrutably-labelled button, every time. I very nearly gave a crucial online presentation, full of beating hearts, at 3fps without even realising. Stuff of nightmares.

Jonathan Taylor reposted

Job alert! 📣 I’m looking for a research assistant to join my new team @idrm.ox.ac.uk Were using #zebrafish to understand gene-environment interactions that shape the heart 🫀generate natural diversity 🐸🐭 and contribute to congenital defects ❤️‍🩹 Full info below, and please share! 🫶🏻 bit.ly/467TO0M

@retof.bsky.social, I sometimes think of your wish, some time ago, for everyone to have their own hype-man on stage when they are giving a conference presentation. My Teams meeting transcript from today seems to have completely hallucinated a colleague interjecting "ok. yeah! play the song! okay"

Jonathan Taylor reposted

We have two funded postdoctoral positions available. Topics encompass: -Next gen light-sheet fluorescence microscopy instrumentation -Structured illumination microscopy and other approaches to extend the resolution limit. -Nonlinear microscopy combined with adaptive optics / phase conjugation

Here’s one for the Bayesians: if you are pulled from an avalanche in cardiac arrest after >60 minutes, your chances of survival are higher than if you are pulled from an avalanche in cardiac arrest after <60 minutes 🤯

Please spread the word among your students, and point out to them that there is extensive support available for them to develop their application, starting with applicant information sessions between now and the end of the year (see link)

A great opportunity to come to Glasgow for an interdisciplinary PhD, benefitting from enhanced support and stipend, and a diverse cohort of students alongside you for an inclusive, team experience for your PhD! Please share widely, and spread the word with your undergraduate students.

DiveIn CDT@diveincdt.bsky.social

📣 Applications Now Open! 🌊 Dive into mission-driven interdisciplinary #STEM research with a fully funded 4-year PhD starting Sept 2026 ✅ Co-create your project ✅ Enhanced stipend ✅ Cohort-based experience ✅Partner network 📅 Applicant Webinar: Nov 26 👉More info & registration: www.divein.org.uk/apply

Big grant submitted, it's always a good sign when I'm *still* excited about the science even when the grind of the application is over 😀. I sketched this graph on my office whiteboard to explain to people the stress of when the trajectory feels like we won't get to the finish line in time!

p.s. there's always something unexpected to raise your blood pressure at the 11th hour: in this case a 'secret' character limit in addition to the stated word limit for one of the sections on the form

This looks great for learning and improving your research git workflows, "Rather than simply teaching commands, the sessions explore the workflows that make them meaningful". Can connect to the talk online, so no excuses not to join!

Institute for Research Software@softwaresaved.bsky.social

🎓 We are pleased to share details of an upcoming hybrid series of short talks featuring #SSIFellow Hui Ling Wong, focusing on practical, research-oriented approaches to using Git. This series of 15-minute talks will run every Tue from 14 Oct to 11 Nov. www.software.ac.uk/news/upcomin...

Jonathan Taylor reposted

Does anyone have any experience with building a DIY upconversion/SHG setup to get pulsed blue out of a Ti:Sapph laser (Chameleon)? It seems like it should be fairly straightforward, but I would value any tips people have, or numbers for efficiency level you achieved. Thanks in advance!

A thoughtful account of why version control is essential for research software: "achieving the highest levels of insight and impact requires robust tooling and reproducibility baked into its core"; "...requires code that can handle significant complexity and can evolve" [1/3]

Institute for Research Software@softwaresaved.bsky.social

➡️ In our latest blog post #SSIFellow Hui Ling Wong delves deeper into how version control helps to make research more reproducible as discussed in a recent event at @imperialcollegeldn.bsky.social. Read more at www.software.ac.uk/blog/keeping...

Very much on my mind as I revamp a course on software development practive for STEM: "Currently, STEM undergraduates learn to program on toy problems. These do not adequately prepare one to deal with sprawling code bases that they will encounter in practice [...]" [2/3]

"emphasis on usability and maintainability will not only cultivate researchers who naturally think in terms of clean code but also equip them with transferable skills that are valuable in any industry". To get students on board & doing this out of choice, they must see benefits for themselves [3/3]

I'm delighted to share the news that I've been promoted to (full) Professor. Feeling very thankful for all those who have mentored and supported me over the years, the smart and enthusiastic team I get to work with on cool science, and the colleagues who make Glasgow a great place to work.

Some wise words on the use of GenAI in scientific activity. "...that is a tacit admission that the work is not worth being done by the scientist. [...] we’ve yielded the opportunity to think about science, discuss our practice, expand our understanding, spark new ideas and develop as researchers."

Carl T. Bergstrom@carlbergstrom.com

A few months ago, Nature published how-to guide for using ChatGPT to write your peer reviews in 30 minutes. This is, of course, a horrible idea. Here’s my response with @jbakcoleman.bsky.social .

Jonathan Taylor reposted

As we mark #PrideMonth, we take this moment to celebrate LGBTQ+ identities and also reflect on the ongoing work to make our universities places where every member can thrive. Thank you to colleagues for co-authoring this powerful piece on Rainbow Office Hours ➡️ gla.ac/3Zio6uv #OneTeamUofG 🏳️‍🌈 🏳️‍⚧️

Jonathan Taylor reposted

#Science Bluesky, do your thing: We're organising the International Symposium on Mechanobiology (ISMB) 2026 in #Glasgow & we're looking for research groups in Latin America & Africa who are doing great work in #Mechanobiology or adjacent areas. Can you indicate some names to me?

Jonathan Taylor reposted

1. Over the past four months I've talked with many foundation directors about science philanthropy during Trump 2.0. Two things come to the fore every time. i) The most important they can do is maintain the pipeline of talent ii) With the federal govt pulling out, ROI is higher now than ever.

Ryan Boileau@bffswithbiology.bsky.social

Oof, just got notice HHMI is not even doing Hanna Gray Fellows, or any competition, this year due to the challenging times in science funding rn 😬 Understandable. On the bright side, I was really proud my application🌈 #science #nih #hhmi

Fully-funded and well-supported PhD opportunity for Black UK-domiciled students here at Glasgow University: www.gla.ac.uk/scholarships.... The main call for applications closed in January, but evidently 2 more places have become available - a potential open goal for a suitable applicant! [1/2]

gla.ac.ukUniversity of Glasgow - Scholarships & funding - James McCune Smith PhD ScholarshipssearchSearch iconClose menu iconMenu icon bar 1Menu icon bar 2Menu icon bar 3

For this scheme, you can choose the topic of study in conjunction with your chosen PhD supervisor. If you are considering PhD study, and are interested and eligible for this opportunity, I would be happy to help link you up with potential supervisors based on the research area you are excited about.

This is a valuable course for UK researchers writing research code and wanting to put their practices on a more robust and open footing, and learn more about best practices in the field.

Institute for Research Software@softwaresaved.bsky.social

🧑‍🏫 The SSI is delivering a course on “Software practices for open and reproducible research” from Tuesday 1-4 April. Find out more about it at www.software.ac.uk/news/worksho...