Microbiome

In #EnvironmentalMicrobiome From functional annotation to functional meaning in microbiome research Read more ➡️ doi.org/10.1186/s40793-026-00956-x

In #Microbiome Temporal dynamics of rhizosphere microbiome assembly and carbon-phosphorus coupling in poplar-medicinal plant intercropping systems Read more ➡️ doi.org/10.1186/s40168-026-02453-2

In #AnimalMicrobiome Multi-omics elucidates the regulatory mechanisms of tryptophan in gut health of weaned piglets Read more ➡️ doi.org/10.1186/s42523-026-00586-1

In #Microbiome Linking stochastic assembly to functional potential, redundancy, and trait patterns in bacterial communities Read more➡️ doi.org/10.1186/s40168-026-02442-5

In #EnvironmentalMicrobiome Metagenomic insights into mechanisms of coral larval settlement induction and inhibition by marine biofilms Read more ➡️ doi.org/10.1186/s40793-026-00945-0

In #Microbiome Comprehensive analyses of archaeal viral genomes reveal genomic characteristics, divergence, and host interactions Read more ➡️ doi.org/10.1186/s40168-026-02445-2

In #AnimalMicrobiome Gut microbiome mediates an evolutionarily conserved social behavior in eusocial insects Read more ➡️ doi.org/10.1186/s42523-026-00560-x

In #Microbiome Aging of the adaptive immune system affects the gut microbiome and systemic levels of vitamin B6 Read more ➡️ doi.org/10.1186/s40168-026-02428-3

In #EnvironmentalMicrobiome From the leaf to the gut and back again: using synthetic bacterial communities to trace the fate and influence of phyllosphere bacteria in an Arabidopsis–Pieris brassicae system Read more ➡️ doi.org/10.1186/s40793-026-00947-y

In #Microbiome Host-guided microbiome-metabolite interactions enable cross-kingdom SynComs for disease suppression Read more ➡️ doi.org/10.1186/s40168-026-02430-9

In #AnimalMicrobiome Temporal variations in the gut microbiota of François’ langur (Trachypithecus francoisi): implications for adaptation to seasonal dietary change and conservation Read more ➡️ doi.org/10.1186/s42523-026-00580-7

In #Microbiome Multi-omics characterization of the skin microbiota reveals the anti-aging roles of Stenotrophomonas maltophilia Read more ➡️ doi.org/10.1186/s40168-026-02433-6

In #EnvironmentalMicrobiome Metagenomic insights into the taxonomic and metabolic diversity of the microbiome of Lake Karum in the Danakil Depression, Ethiopia Read more ➡️ doi.org/10.1186/s40793-026-00938-z

In #Microbiome Ecological and metabolic restructuring of anaerobic microbiomes under sulfate stress via magnetite-enhanced cooperative networks Read more ➡️ doi.org/10.1186/s40168-026-02443-4

In #AnimalMicrobiome Bat skin microbiome and the association of ecoregion and bat species that impacted isolation of members with bioactivity against Pseudogymnoascus destructans🦇 Read more➡️ doi.org/rqj4 #Microbes

In #Microbiome Longitudinal analysis of stowaway microorganisms aboard modules and cargo spacecraft of the Chinese Space Station🛰️ Read more ➡️ doi.org/rqj7

Great to see this finally out Impact of #trikafta/#kaftrio on respiratory microbiomes of adults with #cysticfibrosis from UK,US,& Canada Also shows negative selective impacts of azithromycin on #CF pathogens & #microbiome A need to reevaluate CF polypharmacy in the #CFTR modulator era?

In #EnvironmentalMicrobiome From functional annotation to functional meaning in microbiome research🦠 Read more➡️ doi.org/rqj5 #Microbes

In #Microbiome🦠 Remodelling of cystic fibrosis respiratory microbiota in response to extended elexacaftor–tezacaftor–ivacaftor therapy Read more➡️ doi.org/rqj6 #Microbes

In #AnimalMicrobiome Host genetic architecture and gut microbiota cooperatively regulate early growth in goats🐐 Read more➡️ doi.org/rmkn #Microbes

In #Microbiome Reconstructing community dynamics from limited observations🦠 Read more➡️ doi.org/rn9t #Microbes

In #EnvironmentalMicrobiome Beyond diversity: the functional mechanisms of microbial adapations under climate change in alpine deserts🦠 Read more➡️ doi.org/rn9r #Microbes

🚨Upcoming webinar this week: Don’t miss the talk by Marco Giovannetti, where he discusses research revealing that lettuce morphology plays a bigger role than genetics in determining leaf bacterial communities🦠 Sign up here➡️ cassyni.com/events/CRdy9... #Microbes #PlantBiology

In #Microbiome Whole metagenome sequencing: not deep enough for complete microbial function recovery🦠 Read more➡️ doi.org/rn9s #Microbes

In #AnimalMicrobiome From onset to healing: temporal dynamics of microbial communities pinpoint Midichloria-like organism’s key role in the development of the fish skin disease red mark syndrome🐟 Read more➡️ doi.org/hcgwpc

🚨Only 1 week to go! Don’t miss the talk by Marco Giovannetti, where he discusses research revealing that lettuce morphology plays a bigger role than genetics in determining leaf bacterial communities🥬 cassyni.com/events/CRdy9... #Microbiome #PlantBiology

In #Microbiome Integrated landscape of salivary metagenome and multi-biofluid metabolome characterizes a microbial-metabolic axis in upper gastrointestinal cancer progression🦠 Read more➡️ doi.org/rnwm #Microbes

In #EnvironmentalMicrobiome Linking microbial community composition of three rootstock genotypes to apple replant disease susceptibility🍎 Read more➡️ doi.org/rnwh

In #Microbiome Heat stress enhances gut microbial arginine catabolism to amplify MyD88-dependent inflammatory responses🦠 Read more➡️ doi.org/rnwj

In #AnimalMicrobiome Host genetic architecture and gut microbiota cooperatively regulate early growth in goats🐐 Read more➡️ doi.org/rmkn

In #Microbiome Deciphering microbial community dynamics using cross-sectional data-informed NeuralODE🦠 Read more ➡️ doi.org/rm9x #Microbes

In #EnvironmentalMicrobiome A cooperative cobalamide biosynthesis guild in the endosphere of the edible aquatic plant Wolffia globosa Mankai🦠 Read more➡️ doi.org/rmkj

In #Microbiome Baseline gut microbiome and metabolome profiles predict weight loss after a structured lifestyle intervention🦠 Read more ➡️ doi.org/rm9w

New paper entitled “Phagocytosis of microbial symbionts supports embryonic nutrition in the sponge Halichondria panicea” is out now in @microbiomej.bsky.social! link.springer.com/article/10.1...

In #AnimalMicrobiome Metagenomic analysis reveals resistome characteristics and high-risk resistance genes in the pig nasal cavities, feces, and farm dust🐖 Read more➡️ doi.org/rmkm

In #Microbiome Linking stochastic assembly to functional potential, redundancy, and trait patterns in bacterial communities🦠 Read more➡️ doi.org/rmkf #Microbes

My final PhD chapter is now published in Microbiome (@microbiomej.bsky.social)! Using metabarcoding, photochemical measurements, and the first scRNAseq of a bleaching coral, we examined the microbial ecology of coral bleaching at the single-cell level! 🪸🔥 #CoralReefs 🔗 rdcu.be/zWHQ92WqZQUa

In #EnvironmentalMicrobiome Season and soil properties structure bacterial communities in hyperacid (pH ≤ 2) fumarolic soils of the Tatun Volcanic Group🌋 Read more➡️ doi.org/rmkg #Microbes

In #Microbiome Population-based characterisation of child and adolescent oral bacterial microbiomes🦠 Read more➡️ doi.org/rmkd #Microbes

Happy to see the last parts of my PhD with @milja001.bsky.social now published in @microbiomej.bsky.social (many thanks to all involved!) link.springer.com/article/10.1...

In #AnimalMicrobiome The price of survival: comparative adaptation to high altitudes between yaks and cattle🦠 Read more➡️ doi.org/rjww #Microbes

In #Microbiome 🚨mPower: a real data-based power analysis tool for microbiome study design Read more➡️ doi.org/rjwv #Microbes

In #EnvironmentalMicrobiome From the leaf to the gut and back again: using synthetic bacterial communities to trace the fate and influence of phyllosphere bacteria in an Arabidopsis–Pieris brassicae system🦠 Read more➡️ doi.org/rjwx

In #Microbiome Gut bacterial regulation of primate adaptive thermogenesis at high altitude🦠 Read more ➡️ doi.org/rjws

What if the shape of a lettuce leaf mattered more than its DNA when it comes to the microbes living on it?🥬 Marco Giovannetti discusses the surprising role of lettuce morphology in shaping leaf bacterial communities in this upcoming Cassyni talk: cassyni.com/events/CRdy9... #Microbiome #Microbes

In #AnimalMicrobiome Differential skin-bacteriome-mediated defense against chytridiomycosis in two neotropical frog species🐸 Read more➡️ doi.org/rjc9

Final PhD chapter is PhDone!! ✨ Thrilled to see this out and a massive thank you to my incredible co-authors and mentor @sonnytmlee.bsky.social! Check it out below! #microbiome #microbialmetabolites #research #GutHealth #IBD

In #Microbiome Comprehensive analyses of archaeal viral genomes reveal genomic characteristics, divergence, and host interactions🦠 Read more➡️ doi.org/rjwp #Microbes

In #EnvironmentalMicrobiome Aeonium decorum as a microbial recruitment platform for atmospheric polycyclic aromatic hydrocarbons mitigation in urban gardens🪴 Read more➡️ doi.org/rjdb

In #Microbiome Microbially derived glutathione from Eubacterium rectale alleviates oxidative stress and promotes intestinal epithelial recovery🦠 Read more➡️ doi.org/rjc8 #Microbes