Pinned
🍄 Our new living systematic review and meta-analysis on psilocybin for depression is out now in Nature Mental Health. Here's what we found and the open science infrastructure we built to support it 🧵 Open-Access Link: rdcu.be/fbU5V
Parker Singleton
@parkersingleton.bsky.social
Senior Scientist at Penn Lifespan Informatics and Neuroimaging Center (PennLINC) studying psychedelics and the brain. sypres.io
1.1K followers233 following116 posts
Pinned
🍄 Our new living systematic review and meta-analysis on psilocybin for depression is out now in Nature Mental Health. Here's what we found and the open science infrastructure we built to support it 🧵 Open-Access Link: rdcu.be/fbU5V
Parker Singleton reposted
Replying to @npp-journal.bsky.social
#TWiNPP A living systematic review and meta-analysis supports MDMA-assisted therapy as a promising treatment for PTSD / @parkersingleton.bsky.social @bsevchik.bsky.social @jcobbscott.bsky.social @ted-satterthwaite.bsky.social www.nature.com/articles/s41...
Parker Singleton reposted
Excited that this paper, "Highly replicable multisite patterns of adolescent white matter maturation", has now been published in Neuron! It may be found at cell.com/neuron/fullt.... To freely access the paper for the next 50 days, please use this link: authors.elsevier.com/c/1nxdd3BtfH...
Diffusion MRI (dMRI) is a powerful tool to study white matter maturation. In our new preprint, we process and distribute a new resource of >24,000 ABCD dMRI scans using open source tools! We then evaluate how methods shape inferences about development. 🔗 www.biorxiv.org/content/10.6...
Parker Singleton reposted
Very excited to announce that this living systematic review and meta-analysis is now published in Neuropsychopharmacology! doi.org/10.1038/s413...
🍄 Our new living systematic review and meta-analysis on MDMA for PTSD is now live on medRxiv. Here's what we found and how we built upon our open science infrastructure to support it 🧵 www.medrxiv.org/content/10.6...
Parker Singleton reposted
So excited that our work is now published in PLOS Biology!! 🎉 Check out the final version here: doi.org/10.1371/jour... And for a bit more context and what we found, here’s our earlier thread: bsky.app/profile/goli...
How do intrinsic timescales, which reflect the temporal window of neural processing, mature during development? This study by @goliashf.bsky.social @ted-satterthwaite.bsky.social &co identifies a hierarchical trajectory, from sensorimotor to association cortices. 🧪 #NeuroSky plos.io/46RzqRG
Parker Singleton reposted
Very excited to announce that this work is now published in Scientific Data! doi.org/10.1038/s415...
🧠I am excited to announce that our manuscript introducing a new data resource – PennLEAD (Penn Longitudinal Executive functioning in Adolescent Development) – is now available on bioRxiv. Below are some details highlighting our data resource🧵funded by NIMH R01MH113550 www.biorxiv.org/content/10.1...
Parker Singleton reposted
Awesome new work by @tsalo.bsky.social and @parkersingleton.bsky.social — a small but valuable test-retest dataset comparing single & multi-echo fMRI. Completely open + fully processed!!!!
New dataset out in Data in Brief 🧠 We're releasing an open, test-retest neuroimaging dataset built for directly comparing single-echo vs. multi-echo fMRI, head-to-head, in the same people. 1/
Parker Singleton reposted
New dataset out in Data in Brief 🧠 We're releasing an open, test-retest neuroimaging dataset built for directly comparing single-echo vs. multi-echo fMRI, head-to-head, in the same people. 1/
Parker Singleton reposted
Here's bonus slides on cross-validation tests, separate from our preprint. Covering: 1. paired (sign-flip) permutation test 2. label-swap permutation test 3. sample-level vs fold-averaged stats 4. a common misapplication of the corrected t-test 5. three bootstrap variants 1/N
In a meta-analysis of 210 biomedical AI studies that statistically compared models under cross-validation, 97% used invalid statistical tests. Here's our new preprint doi.org/10.64898/202... led by @tianchu.bsky.social @hetuli.bsky.social @shaoshiz.bsky.social @nichols.bsky.social 1/N
Parker Singleton reposted
Thrilled to share our latest paper, out recently in Nature Mental Health. "Optimizing functional connectivity scanning conditions for predicting autistic traits" www.nature.com/articles/s44... 1/n
Take a look at some of our latest results, diving into task-fMRI data, autism, and predictive modelling: "What is the best brain state to predict autistic traits?" www.medrxiv.org/content/10.1... 1/2
Parker Singleton reposted
I always assumed that brain function had to line up with cytoarchitectonics. It turns out I was wrong. Human cortex, especially PFC, is tiled by chains of functional patches that subdivide and interlink architectonic areas into parallel processing streams. www.biorxiv.org/content/10.6...
Parker Singleton reposted
Diffusion MRI (dMRI) is a powerful tool to study white matter maturation. In our new preprint, we process and distribute a new resource of >24,000 ABCD dMRI scans using open source tools! We then evaluate how methods shape inferences about development. 🔗 www.biorxiv.org/content/10.6...
Parker Singleton reposted
Incredible work by the absolutely stellar @bsevchik.bsky.social and @parkersingleton.bsky.social — the second installment of our open-science living meta-analysis of psychedelics for mental health.
🍄 Our new living systematic review and meta-analysis on MDMA for PTSD is now live on medRxiv. Here's what we found and how we built upon our open science infrastructure to support it 🧵 www.medrxiv.org/content/10.6...
And here's our second installment of sypres.io, co-led by the brilliant @bsevchik.bsky.social !!
🍄 Our new living systematic review and meta-analysis on MDMA for PTSD is now live on medRxiv. Here's what we found and how we built upon our open science infrastructure to support it 🧵 www.medrxiv.org/content/10.6...
Parker Singleton reposted
This paper has been a long time coming. Instead of reanalyzing the same old resting-state fMRI datasets, we combined nearly all datasets around the world. Note that we didn't exactly find indisputable evidence for "default mode network disintegration." www.nature.com/articles/s41...
Parker Singleton reposted
Beyond delighted to see this paper -- our first from the SYPRES initiative -- now out at @natmentalhealth.nature.com. Check out Parker's awesome thread below, w/ links to dashboard + all code + data.
🍄 Our new living systematic review and meta-analysis on psilocybin for depression is out now in Nature Mental Health. Here's what we found and the open science infrastructure we built to support it 🧵 Open-Access Link: rdcu.be/fbU5V
🍄 Our new living systematic review and meta-analysis on psilocybin for depression is out now in Nature Mental Health. Here's what we found and the open science infrastructure we built to support it 🧵 Open-Access Link: rdcu.be/fbU5V
In partnership with metapsy.org we built an interactive dashboard for exploring the data. Users can: • Filter studies by characteristics • Test different analysis parameters • Test moderators • Download figures and reports Dashboard: metapsy.org/sypres/psilo...
Huge shout out to co-first author @bsevchik.bsky.social, Analiese Lahey, @pimcuijpers.bsky.social, @mathiasharrer.bsky.social, @mntj21.bsky.social, Sandeep Nayak, Eric Strain, @vandyatvandy.bsky.social, Bob Dworkin, @jcobbscott.bsky.social, @ted-satterthwaite.bsky.social, @pennlinc.bsky.social
🍄 Our new living systematic review and meta-analysis on psilocybin for depression is out now in Nature Mental Health. Here's what we found and the open science infrastructure we built to support it 🧵 Open-Access Link: rdcu.be/fbU5V
Our database includes 200+ effect sizes, encompassing all depression outcomes and timepoints reported by arm in each of the 15 RCTs included. This database can be downloaded from our website (sypres.io) or imported directly into R environments using the metapsyData package.
🍄 Our new living systematic review and meta-analysis on psilocybin for depression is out now in Nature Mental Health. Here's what we found and the open science infrastructure we built to support it 🧵 Open-Access Link: rdcu.be/fbU5V
sypres.io is our new initiative featuring: 📊 Regularly updated meta-analyses 🔍 User-guided sensitivity and moderation analysis 🕵️ Transparent study quality & risk-of-bias assessments ⚙️ Open code & data
Parker Singleton reposted
What makes brains (un)conscious? We provide new answers—and a universal mammalian blueprint for information processing—in a cross-species study of humans, macaques, marmosets & mice. Exploring convergent breakdown of integration in: www.nature.com/articles/s41... Led by @loopyluppi.bsky.social
Happy to have been a part of yet another tour de force led by the one and only @loopyluppi.bsky.social !
The Mammalian Architecture of Information Integration🧠🧬 For #BrainAwarenessWeek, excited to share our latest work about #Neuroscience of #Consciousness in @nathumbehav.nature.com www.nature.com/articles/s41... 🧵👇
Parker Singleton reposted
The 6x US memory champion – Nelson Dellis – can memorize a deck of cards in 40 seconds and knows the first 10K digits of pi. To figure out how, he let us peak inside his brain. Here is what we learned in our precision brain mapping study www.biorxiv.org/content/10.6... youtube.com/shorts/MryMq...
Parker Singleton reposted
Very happy that this paper from our lab is now out in @pnas.org! What happens when the *same* person experiences the *same* information with a *different* interpretation? Nearly the whole 🧠—well, at least nearly all association cortex—changes how it represents that information! tinyurl.com/p8chj2j7
Parker Singleton reposted
Parker Singleton reposted
We think of white matter as the highways of the brain. But when we followed development along those highways, we were surprised. The journey is more complex than we thought. My final PhD paper, “Two Axes of White Matter Development”, is now out in @natcomms.nature.com! 🛣️🧠✨ 🔗 bit.ly/wm2axes
Every participant had a MEQ-30 score of 150: youtu.be/-c9-poC5HGw?...
Parker Singleton reposted
My first preprint is out! Thank you to my brilliant collaborators & mentors for making this possible @vmarchman.bsky.social @arokem.org @jyeatman.bsky.social, as well as everyone behind the awesome open source software that we use @pennlinc.bsky.social @cieslakmatt.bsky.social (& many not on bsky)
Neonatal brain-age models in full- and preterm infants https://www.biorxiv.org/content/10.64898/2026.01.23.701337v1
Another important one for psychedelics fMRI ppl: www.biorxiv.org/content/10.6...
Come join an amazing team where you're guaranteed to set yourself up for future success!
#PenNLINC is recruiting a clinical coordinator / lab manager!!! Looking for someone who is good with both people + code, wants to learn to acquire + analyze imaging data. Alumni in this role have written 1st author papers + gone to top grad programs. Website: www.pennlinc.io Job: bit.ly/4ojvCir
Parker Singleton reposted
Parker Singleton reposted
🧠I am excited to announce that our manuscript introducing a new data resource – PennLEAD (Penn Longitudinal Executive functioning in Adolescent Development) – is now available on bioRxiv. Below are some details highlighting our data resource🧵funded by NIMH R01MH113550 www.biorxiv.org/content/10.1...
Parker Singleton reposted
After years of development and testing, we are happy to present our work in "Diffusion MRI Processing in the HEALthy Brain and Child Development Study: Innovations and Applications"! www.biorxiv.org/content/10.1.... A thread:
Parker Singleton reposted
Hot off the press!
🚨Publication alert! 🚨 Why does stress drive psychopathology & transdiagnostic disease? We present the Allostatic Triage Model of Psychopathology (ATP Model), which explains stress-induced transdiagnostic disease pathogenesis through a bioenergetic lens. www.sciencedirect.com/science/arti...
Parker Singleton reposted
🚨 New science alert! Our cross-species study, now in Nature Neuroscience, demonstrates psychedelics distort how we should interpret functional brain imaging. 👇🧵 nature.com/articles/s41... #Neuroscience #Psychedelics #BrainImaging
Parker Singleton reposted
Amazing stuff here from @goliashf.bsky.social and the RBC team! Harmonized and curated imaging and phenotype data from over 6,000 youth easily accessible without any DUA. Check it out.
Excited to share that our work introducing the Reproducible Brain Charts (RBC) data resource is now published in Neuron!! 🎉 📚 Read the paper: authors.elsevier.com/c/1lpaF3BtfH... 🧠 Explore the RBC dataset: reprobrainchart.github.io
Parker Singleton reposted
New preprint from stellar IRTG PhD student Amelie Rauland + team on white matter bundle reconstruction! Shows that WM bundles can be reliably extracted from simple 32-direction dMRI & features predict cognition - huge potential for legacy and clinical data. Thread 👇 www.biorxiv.org/cgi/content/...
I'm near certain sLFOs are big for psychedelics.
An exciting 🆕 extension of our sLFO/FC inflation work (www.nature.com/articles/s41...) Extracting the sLFO signal from BOLD data not only sharpens FC estimates.. ..the sLFO itself - via links to arousal - captures variability in trait + state drug use phenotypes: tinyurl.com/msanmrnc #neuroimaging
Parker Singleton reposted
Since July 21st, we have a good reason to celebrate the summa cum laude Defense of the newly minted Dr. Hettwer who received her PhD from @hhu.de under the supervision of Prof. Simon Eickhoff @sbe.bsky.social with strongest support of Dr. Sofie Valk! Congratulations Meike!!!🥂👏🏻🥁🎊
"Spatiotemporal asymmetries on brain energy landscape uncover system entrapment related to depression severity" www.researchsquare.com/article/rs-7...