silargi.bsky.social

silargi.bsky.social

@silargi.bsky.social

Here for pathogen genomic surveillance and AMR. Won't turn away cute animal videos.

363 followers239 following11 posts

silargi.bsky.social reposted

Early detection is key to responding effectively to respiratory virus threats. We have just published new 𝗴𝘂𝗶𝗱𝗮𝗻𝗰𝗲 𝗼𝗻 𝗶𝗻𝘁𝗲𝗴𝗿𝗮𝘁𝗲𝗱 𝗿𝗲𝘀𝗽𝗶𝗿𝗮𝘁𝗼𝗿𝘆 𝘃𝗶𝗿𝘂𝘀 𝘀𝘂𝗿𝘃𝗲𝗶𝗹𝗹𝗮𝗻𝗰𝗲 to help countries across Europe detect changes in virus circulation earlier and build a 𝗰𝗹𝗲𝗮𝗿𝗲𝗿 𝗽𝗶𝗰𝘁𝘂𝗿𝗲 𝗼𝗳 𝗿𝗲𝘀𝗽𝗶𝗿𝗮𝘁𝗼𝗿𝘆 𝗱𝗶𝘀𝗲𝗮𝘀𝗲 𝘁𝗿𝗲𝗻𝗱𝘀.

silargi.bsky.social reposted

Applications are open for the October 2026 Omics Codeathon, hosted virtually by ASBCB. Free and open to researchers, biologists, data scientists, and coders, including those newer to bioinformatics. 20 to 31 Oct 2026. Apply by 29 May. Apply Here 👇️ docs.google.com/forms/d/1YkP...

docs.google.comOmics Codeathon General Application - October 2026The African Society for Bioinformatics and Computational Biology with support from the National Institutes of Health Office of Data Science Strategy and other organizations is pleased to announce a…

silargi.bsky.social reposted

📰 The UK's largest ever real-world study into RSV vaccination has confirmed that babies born to vaccinated mothers are up to 85% less likely to end up in hospital with an RSV chest infection. Thanks to all the NHS health professionals who deliver this vital programme 👏

Now with new and improved flavour! Great to see that it generates the blast comparison between two genomes in-app.

Martin Hunt@martibartfast.bsky.social

Ziplign published in JOSS. Tool to easily interactively compare two bacteria genomes. Inspired by ACT, but easier to install and use. Drag and drop files, or download using accessions. It runs blast for you. No terminal needed. github.com/martinghunt/...

silargi.bsky.social reposted

AI folks now having to realise what GWAS folks did about studying bacterial genome datasets. Great work by great researchers

PLOS Biology@plosbiology.org

#MachineLearning methods are used to predict #AntimicrobialResistance #AMR from genomic data. @lbarquist.bsky.social &co show that sampling biases driven by population structure severely undermine the accuracy of AMR prediction models even with large datasets @plosbiology.org 🧪 plos.io/4iZ0zXQ

It is hosted in collaboration between the WHO’s Public Health Laboratory and Innovation Platforms Unit, the Epidemic and Pandemic Management Unit, and the Information Network for Epidemics (EPI-WIN).

silargi.bsky.social reposted

After over 3 years of negotiations, WHO Member States have finalized a draft #PandemicAccord to make the world safer from future pandemics. The draft agreement will now be submitted to WHO’s Member States meeting at the #WHA78 for consideration and adoption. bit.ly/3EaZQmL

silargi.bsky.social reposted

silargi.bsky.social reposted

📣 There is one week left to participate in WHO's online consultation on the critical features of pathogen genomic data-sharing platforms to meet public health needs. Thank you to all those who have already submitted their feedback.

silargi.bsky.social@silargi.bsky.social

Does your team deposit and access pathogen genomic data via data-sharing platforms for public health use? Participate in WHO's online consultation on the critical features of pathogen genomic data-sharing platforms to meet public health needs. All info here: www.who.int/news-room/ar...

silargi.bsky.social reposted

🚀✨ 10 DAYS TO GO! ✨🚀 The countdown is ON for the first webinar of the TARGetAMR Monthly Webinar Series, and you don’t want to miss this! 🎉 📅 Mark your calendars – it’s happening soon! 👇 Sign up now before it’s too late: www.targetamr.org.uk/hdrevents/ja... #Countdown #LaunchWebinar #RegisterNow

silargi.bsky.social reposted

Watch this space! ARTIC tools & resources for #mpox sequencing and analysis coming very soon! #wellcometrust #nanopore #illumina #molecularepidemiology #pathogen #pathogensurviellance #bioinformatics #epidemiology #virus #outbreak #clinicalvirology #sequencing

silargi.bsky.social reposted

Está abierta la convocatoria para que investigadores jóvenes nos acompañen en la 2nd Minería genómica de productos naturales de Latinoamérica - Applications are now open for #ECRs to join us at the 2nd Genome mining of natural products, Latin America 2024 -please use QR code #Microsky

silargi.bsky.social reposted

JOB ALERT! Come work with me at LSHTM to investigate transmission of Klebsiella pneumoniae in neonatal units in Africa using bioinformatics and genomic epi. Great team, Gates funded, £44-50k/yr, 1-year postdoc to start with possibilities to extend. Closing March 26. jobs.lshtm.ac.uk/vacancy.aspx...

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