silargi.bsky.social reposted
silargi.bsky.social
silargi.bsky.social
@silargi.bsky.social
Here for pathogen genomic surveillance and AMR. Won't turn away cute animal videos.
363 followers239 following11 posts
silargi.bsky.social reposted
silargi.bsky.social reposted
ARTIC network has published Bundibugyo (BDBV) sequencing resources as the 2026 outbreak continues in DRC & Uganda. We have compiled guidance for labs wishing to sequence, assemble and analyse BDBV genomes: artic.network/viruses/bdbv/bdbv-sequencing-guide.html
silargi.bsky.social reposted
Applications are open for the October 2026 Omics Codeathon, hosted virtually by ASBCB. Free and open to researchers, biologists, data scientists, and coders, including those newer to bioinformatics. 20 to 31 Oct 2026. Apply by 29 May. Apply Here 👇️ docs.google.com/forms/d/1YkP...
silargi.bsky.social reposted
silargi.bsky.social reposted
Back at Day 2 of the @nationalacademies.org Workshop on Enhancing Scientific Integrity. We start with @urisohn.bsky.social who will talk about the Wharton Credibility Lab, which launched AsCollected, to document how, where, and when data were collected. credlab.wharton.upenn.edu
📣 Applications are now open! Thrilled to share that the IPSN Catalytic Grant Fund is now accepting applications for their second round of funding, supporting the scale-up of #genomics innovation and capacity-building in LMICs. 👉 Find out how to apply: bit.ly/WHOIPSNfunding
silargi.bsky.social reposted
ABI is calling for nominations for its Interim Governing Board, our highest decision making authority. We are looking for senior leaders from across Africa and African scientists working internationally. Nominate here: redcap.h3abionet.org/redcap/surveys/?s=3YMYTMR3HELCNW37 #AfricanScience #ABI
Now with new and improved flavour! Great to see that it generates the blast comparison between two genomes in-app.
Ziplign published in JOSS. Tool to easily interactively compare two bacteria genomes. Inspired by ACT, but easier to install and use. Drag and drop files, or download using accessions. It runs blast for you. No terminal needed. github.com/martinghunt/...
silargi.bsky.social reposted
AI folks now having to realise what GWAS folks did about studying bacterial genome datasets. Great work by great researchers
#MachineLearning methods are used to predict #AntimicrobialResistance #AMR from genomic data. @lbarquist.bsky.social &co show that sampling biases driven by population structure severely undermine the accuracy of AMR prediction models even with large datasets @plosbiology.org 🧪 plos.io/4iZ0zXQ
Please join us for the @who.int EPI-WIN webinar introducing WHO’s report on Attributes and Principles of Pathogen Genomic Data-Sharing Platforms. 24 November 2025, 1-2pm CET. 🔗 Register: who.zoom.us/webinar/regi... 👉 Webinar info: www.who.int/news-room/ev... 📄 Report: iris.who.int/bitstreams/f...
silargi.bsky.social reposted
Join us for the #PHA4GECon2025 & #IPSNGPF2025 hosted by IPSN, @afro.who.int and @pha4ge.bsky.social. Join our expert panel on October 27, 2025, as they tackle key genomics data challenges shaping global surveillance. Collaborate, share insights, and drive public health innovation.
silargi.bsky.social reposted
Now with updated invited speakers; please take a look & consider putting in an abstract if of interest! Giving an opportunity to the eukaryotic side of microbial genomics to shine 😊Sept 12, Glasgow, 1-day conference. #MicroSky #protistsonsky #protists #fungi microbiologysociety.org/event/full-e...
silargi.bsky.social reposted
Our latest preprint is out describing amr.watch - a platform for monitoring AMR trends from global genomics data: www.biorxiv.org/content/10.1... (1/6)
silargi.bsky.social reposted
Reminder to join the latest @who.int IPSN EPI-WIN webinar on current and future perspectives of genomic surveillance of mpox - today @ 13:00 CET
silargi.bsky.social reposted
After over 3 years of negotiations, WHO Member States have finalized a draft #PandemicAccord to make the world safer from future pandemics. The draft agreement will now be submitted to WHO’s Member States meeting at the #WHA78 for consideration and adoption. bit.ly/3EaZQmL
silargi.bsky.social reposted
🦘✂️ Thanks to @cziscience.bsky.social , @wytamma.bsky.social and I are writing the next version of the Snippy bacterial variant calling pipeline. We want your input on what features s it will have. Please fill out this (longish) survey to help make Snippy great again! forms.gle/YJP6WQjsk8KK...
silargi.bsky.social reposted
Nature research paper: Clonal Candida auris and ESKAPE pathogens on the skin of residents of nursing homes https://go.nature.com/4igrfC1
📣 There is one week left to participate in WHO's online consultation on the critical features of pathogen genomic data-sharing platforms to meet public health needs. Thank you to all those who have already submitted their feedback.
Does your team deposit and access pathogen genomic data via data-sharing platforms for public health use? Participate in WHO's online consultation on the critical features of pathogen genomic data-sharing platforms to meet public health needs. All info here: www.who.int/news-room/ar...
Does your team deposit and access pathogen genomic data via data-sharing platforms for public health use? Participate in WHO's online consultation on the critical features of pathogen genomic data-sharing platforms to meet public health needs. All info here: www.who.int/news-room/ar...
silargi.bsky.social reposted
🚀✨ 10 DAYS TO GO! ✨🚀 The countdown is ON for the first webinar of the TARGetAMR Monthly Webinar Series, and you don’t want to miss this! 🎉 📅 Mark your calendars – it’s happening soon! 👇 Sign up now before it’s too late: www.targetamr.org.uk/hdrevents/ja... #Countdown #LaunchWebinar #RegisterNow
silargi.bsky.social reposted
🔥 Webinar Series Launch! 🔥 ‘#Genomics and Beyond: A Holistic Approach to Tackling #AMR in East Africa’ 🌍 Don't miss Prof. Matthew Holden #StAndMedicine sharing his expertise. Register Now www.targetamr.org.uk/hdrevents/ja...
Predict antimicrobial resistance, master data-sharing, and enhance your expertise in AMR genomics using cutting-edge databases through this FREE online course starting on September 30th www.futurelearn.com/courses/anti...
silargi.bsky.social reposted
silargi.bsky.social reposted
Please join us to hear how genomics is helping in response to the multiple outbreaks of Dengue from the @who hosted International Pathogen Surveillance Network. Register here: echo.zoom.us/webinar/regi...
silargi.bsky.social reposted
silargi.bsky.social reposted
JOB ALERT! Come work with me at LSHTM to investigate transmission of Klebsiella pneumoniae in neonatal units in Africa using bioinformatics and genomic epi. Great team, Gates funded, £44-50k/yr, 1-year postdoc to start with possibilities to extend. Closing March 26. jobs.lshtm.ac.uk/vacancy.aspx...
The International Pathogen Surveillance Network launches catalytic grant fund for pathogen genomics. Grants between US$50,000 and US$250,000 are available for IPSN members from low- and middle-income countries (and consortia) www.who.int/news/item/23...
You are up to date.