Clarence Mah

At #scverse2026 in Copenhagen this week for single-cell/spatial biology + open-source tools. Ask me for stickers! ✨ My workshop closes the program Wed, previewing 3D spatial omics and why human-in-the-loop still matters. @scverse.bsky.social @stellaromics.bsky.social @marimo.io

I'm experimenting with reactive notebooks for spatial omics. Introducing the LandmarksWidget: draw regions on tissue and bring points straight back into your Python analysis, no tool‑hopping. Built on anywidget + marimo. What are your #spatialomics analysis pain points?

Come check out cool demos with @marimo.io (reactive Python notebooks!) I’ll be doing a small demo at the next community call aug 25 on spatial omics. deets: luma.com/13c69h7x I'm also a new marimo ambassador! do reach out for event collabs in San Diego or Boston👋

It's been a minute but I found my way back to a conference; I'll be at AGBT this week representing @stellaromics.bsky.social to lend my experience communicating all things #spatialbio #bioinformatics #techbio #ai ! Looking forward to meeting new folks, please reach out if interested! 🧬🔬

Glad to be part of such an open and collaborative community pushing #SpatialBio forward! Thanks for inviting and hosting us @kevinyamauchi.bsky.social @lucamarconato.bsky.social & Giovanni Palla 🙏 I focused on the intro notebook and improving usability for first time users ⚒️ check it out! ->

Closing 2024, scverse celebrates growth and collaboration! Huge thanks to everyone on this journey and our core team & board (@fabiantheis.bsky.social, @francescafinotello.bsky.social, @steglelab.bsky.social, Nir Yosef, @panosroussos.bsky.social, @robp.bsky.social). Here's to an inspiring 2025!

Oof, software releases are always so nerve racking 😅 just updated bento-tools.readthedocs.io to v2.1.4 🥳 We now support 1-to-many spatial indexing for mapping cells to multiple organelles/subcellular domains, enabling the modeling of complex spatial relationships! #spatialbiology 🧪🧬🖥️

This looks amazing! Really appreciate the focus on documentation and usability.

that's a lot of git commits

I'm not in NLP or javascript, but found compromise.cool is a very cool example of "less is more" ❤️ #opensource

Hey science folks 🧪! Trying to stay on top of #SpatialBiology convos, tech, studies, conferences, etc.? Well here's a feed for you! bsky.app/profile/did:...

oof, this was probably inevitable with the status quo. but also eLife's impact factor would simply drop over time to reflect the "lower quality" if it really is the case. seems like a hasty decision by Clarivate. 🧪 www.science.org/content/arti...

Restarting a previous discussion on here: How convinced are #SingleCell people by cell-cell communication methods? I'm still at "not very" 😅 I see them used everywhere, but I don't know of any really good way to validate them... More importantly, I don't know of any *non-simulated* training data.

This is hard to hear. A lot more cuts to Federal science funding are likely in the offing. We need to find new/better/more ways to drive interdisciplinary collaboration and cooperation in science 🧪

cue Python vs R 🧪

So.. according to this umap, what cell type are you? 🧬🖥️

Feeling blessed to be able to travel for science 😊 Shout-out to #scverse for hosting the SpatialData Workshop in Basel this week!

Genomics, evolution, and more starter pack! Help build community with this starter pack. This list is currently incomplete. Want to be included? Reply and I will remedy that! go.bsky.app/JjvzkWU

Great list of curated individuals in the space! Though I recommend checking out who exactly is included 🧐 you can either "follow all" or follow accounts individually

Thanks for all the recent follows, I'm happy to see many familiar faces 😊 I'd like to briefly introduce myself here. I am a #bioinformatics scientist in #SanDiego building methods for #spatialbiology. I love building open source tools for the community and am excited to meet all of you!