Jackson Hoffman
Jackson Hoffman
@jxhoffman.bsky.social
Scientist in North Carolina studying chromatin remodelers and transcription factors. @fnucleosome.bsky.social coorganizer ORCID: 0000-0002-6256-144X Views and posts are all my own
1K followers674 following119 posts
Jackson Hoffman reposted
🧬🧬🧬 Join us on Wednesday next week for the next #FNucleosome seminar. We've got two exciting transcription/chromatin talks from @nellykanata.bsky.social and Yukun Wang! You can register here to receive the zoom invite: us06web.zoom.us/webinar/regi...
Jackson Hoffman reposted
Please share! I am recruiting up to 2 postdoctoral fellows. Application: apply.interfolio.com/191385
Jackson Hoffman reposted
Are you interested doing a Postdoc in my lab? One thing I can promise: We’ll have fun. liu.se/en/work-at-l...
Jackson Hoffman reposted
Jackson Hoffman reposted
Jackson Hoffman reposted
📢🧬Join us on Wednesday, Oct 7th for the next #FragileNucleosome seminar to hear exciting chromatin stories from Moonmoon and Paul! If you still haven't registered for our series: us06web.zoom.us/webinar/regi...
Jackson Hoffman reposted
I will hire a Postdoc to study the genomic determinants of tumor heterogeneity Please, get in touch if interested, or help me spread the voice @scilifelab.se @kawresearch.bsky.social @liu.se liu.se/en/research/...
Jackson Hoffman reposted
CUT&ID does Genomics+Proteomics in one shot via the fusion protein Lazarus Out @narjournal.bsky.social Unstoppable @annanordin.bsky.social is thinker+executor Get in touch if you wish to try it—plasmid soon @addgene.bsky.social 🙏 @liu.se @scilifelab.se @kawresearch.bsky.social @cancerfonden
Can one map the genome-wide binding (1) and its protein partners (2) simultaneously from the same sample? Yes, one can. with CUT&ID ✂️🪪 Spearheaded — singlehandedly — by @annanordin.bsky.social No need of transgenesis, cloning and overexpression. Check it out, it's fast and its works.
Jackson Hoffman reposted
We are recruiting! Wet&Dry either combined or separate. If you are excited about gene regulation, new methods in genomics and AI-based interpretation! Talk to us!
There is still time to apply for the EMBL International PhD Programme! 📢 Don’t miss this opportunity to receive dedicated mentoring while doing interdisciplinary research. Research groups across EMBL are recruiting now! bit.ly/4x9Edss
Jackson Hoffman reposted
📢🧬join us on Wednesday, Sept 23rd for the next #FNucleosome seminar to hear exciting chromatin/transcription stories from Oscar Campos and @giacomodonatijd.bsky.social! Register here: us06web.zoom.us/webinar/regi...
Jackson Hoffman reposted
Hello World ! Reminder about our open postdoc position 🧪🧬 Reviewing applications until October - get in touch to know more about what's hot in the lab these days ! Application details in the post below 👇👇 #EvoEpi #MolaroLab #watwat #ERC
Hello World ! We have another postdoc position open in the lab! Are you a freshly minted Ph.D. with a passion for chromatin and evolution ? Come join our ERC project #EvoEpi ! Inclusive environment + cool people + great science = success details 👉 tinyurl.com/3r6zk54n Repost are always appreciated
I'm super excited for our new season of #FragileNucleosome seminars, which kicks off tomorrow with @mpalamin.bsky.social and @robertovn.bsky.social!
🎤 #FragileNucleosome is back next Wednesday! Hope you enjoyed the summer!Join us next 📅Wednesday to hear about 🧬fascinating research from @mpalamin.bsky.social from Krebs lab and @robertovn.bsky.social from Vos lab. To register if you haven't before: us06web.zoom.us/webinar/regi...
Jackson Hoffman reposted
🎤 #FragileNucleosome is back next Wednesday! Hope you enjoyed the summer!Join us next 📅Wednesday to hear about 🧬fascinating research from @mpalamin.bsky.social from Krebs lab and @robertovn.bsky.social from Vos lab. To register if you haven't before: us06web.zoom.us/webinar/regi...
Jackson Hoffman reposted
📣 Preprint alert! We developed a method to analyze concurrent interactions between multiple chromatin regions at single alleles at sub-nucleosome resolution (multi-way Micro-Capture-C, mwMCC) & used this to study structural synergy within super-enhancers. 1/14 www.biorxiv.org/content/10.6...
Jackson Hoffman reposted
Jackson Hoffman reposted
Our PBAF paper is finally out in Science Advances! We’ve been working on this project for upwards of 10 years (depending on who you ask), with Alisha heading the effort (and doing most of the work) to understand the role of PBRM1 in breast cancer metastasis. www.science.org/doi/full/10..... (1/11)
Jackson Hoffman reposted
Join the lab to study mechanisms of transcription factors, transcription, and/or chromatin! jobrxiv.org/job/uconn-he...
Jackson Hoffman reposted
📄 That's a wrap 📄 we're excited to share that the latest from @arnaudkr.bsky.social 's lab and Judith Zaugg's lab is at last online at doi.org/10.1038/s415.... Many thanks to my co-first @valentinabaderna.bsky.social and to @embl.org for the wonderful research environment.
Happy to share the latest story from @arnaudkr.bsky.social's lab @embl.org! With @guidobarzaghi.bsky.social, we used Single Molecule Footprinting to quantify how often chromatin is accessible at enhancers after TF and chromatin environment changes! Check our preprint bit.ly/3XQMFxN + thread ⬇️ 1/11
Jackson Hoffman reposted
Next summer's Epigenetics GRC (I'm co-chairing with Deborah Bouch'is) is shaping up nicely with an all-star lineup of speakers working on a broad range of organisms and systems and everything from molecular mechanisms to new phenomena. Apply and put it on your calendar! www.grc.org/epigenetics-...
Jackson Hoffman reposted
Preprint alert! 🚨 We are very excited to share our new manuscript on Bohring-Opitz syndrome, a devastating rare monogenic disorder driven by truncating variants in ASXL1. This project was led by PhD student Emma Doyle, one of the OG Conway lab members 💪. 1/6 www.biorxiv.org/content/10.6...
Jackson Hoffman reposted
I am very excited to share the work of my PhD with @eddaschulz.bsky.social, now on BioRxiv! 🎉 🧵⬇️ (1/9) How does the transcription↔️chromatin crosstalk ensure monoallelic expression?
Transcription-dependent heterochromatin at the Xist promoter shapes the random choice of the inactive X chromosome https://www.biorxiv.org/content/10.64898/2026.07.22.737064v1
Jackson Hoffman reposted
RNA-seq tells us how much RNA is present in the cell. But to understand gene regulation, we need to easily measure the synthesis and decay rates driving this abundance. We introduce AIR-seq: analog intrinsic recoding sequencing. (1/6) www.biorxiv.org/content/10.6...
Congrats to the Beamish #UMichMed and Watts #NIEHS labs on the new paper investigating the requirement for Sox8 in transcription, histone modification, and cell identity/function in proximal tubule cells!: www.sciencedirect.com/science/arti...
Jackson Hoffman reposted
40 individuals with the clinical picture of FOXG1 syndrome and a completely intact FOXG1 gene. So what’s going wrong then? Our new paper in @natcomms.nature.com traces the answer to a stretch of non-coding DNA 665 kb away from the gene. (1/7)
Congrats to @charlyguardia.bsky.social and @asmitasingh.bsky.social on the new paper! Awesome work out of RDBL here at NIEHS!
(1/9) 🚨 Our lab’s first major paper is now out in Nature Communications! We show that ATG9A and ATG2A/B act as lipid-dependent gatekeepers linking autophagosome/amphisome formation to small extracellular vesicle (sEV) secretion.
Jackson Hoffman reposted
Jackson Hoffman reposted
Our preprint is now out in @natgenet.nature.com ! doi.org/10.1038/s415... We measured Sox2 promoter bursting dynamics with the SCR enhancer positioned at different distances within a genomic locus devoid of confounding effects in mESC: Main findings in the 🧵 below:
Celebrating 10 years of our lab with a new preprint: www.biorxiv.org/content/10.1... How does enhancer location within a TAD control transcriptional bursts from a cognate promoter? Experiments by Jana Tünnermann and modelling by Gregory Roth
Jackson Hoffman reposted
Excited to share the first preprint from my lab! Transcription has been implicated in regulating SMC complex function, but how this works has been unclear. Here, we use a yeast quiescence model to examine how transcription targets condensin.
Asymmetric condensin loop extrusion is regulated by RPA-coated single-stranded DNA in quiescent cells https://www.biorxiv.org/content/10.64898/2026.07.10.737861v1
Jackson Hoffman reposted
📢 Attention Recent Graduates 📢 I’m hiring a Postgraduate Research Associate to join my growing team at Yale! If you’re passionate about RNA biology/Gene Regulation and are looking to gain hand-on research experience before graduate school, please consider applying! postdocs.yale.edu/posts/2026-0...
Jackson Hoffman reposted
Still very impressed by the work of the @andersshansen.bsky.social team. Excited to see how these findings extend to endogenous enhancers in future studies!
I’ve just published a #PreprintReview of “Live-cell imaging of enhancer-promoter dynamics reveals transient contact-driven gene activation” on @prereview.bsky.social prereview.org/reviews/2124...
Jackson Hoffman reposted
This is brilliant! www.nature.com/articles/s41...
Jackson Hoffman reposted
The Kaplan Lab at the University of Pittsburgh has received funds to recruit a postdoctoral fellow to establish a multiplexed assay of variant effect for a disease gene. This relates to our studies on RNA Polymerase II. This project requires experience with human cell lines and genomics 1/
Apply to be part of our fall seminar series!
We just started our summer break, but we're also planning our September-December seminar schedule! If you have an exciting chromatin/transcription story that will be ready for the spotlight by then, use the survey below to nominate yourself to give a #FNucleosome talk 🧬🧬 forms.gle/1EKYN2Nt79ar...
Jackson Hoffman reposted
FASTEN YOUR SEATBELTS: Tamina Weiss, inspired by previous data from @ppagella86.bsky.social found that beta-catenin is more than an adaptor protein downstream of #WNT It is an orchestrator that scouts and opens enhancers for transcriptional activation @biorxivpreprint.bsky.social
Enhancer pioneering activity of Wnt/β-catenin signaling https://www.biorxiv.org/content/10.64898/2026.06.12.731851v1
Jackson Hoffman reposted
(1/n) Very excited to share tri-lab collab (Mirny & Zechner) led by Harvey, Henrik & Jack: Q: How do enhancers & promoters interact in space (contact vs. action-at-a-distance) and time (stable vs. transient)? A: Transient E-P contact (~25-42 nm lasting ~10-20 sec): www.biorxiv.org/content/10.6...
Jackson Hoffman reposted
Very excited to present some of my PhD work from the @claudiocantu81.bsky.social Cantù lab tomorrow!
🧬This Wednesday will be the final seminar of the Spring 2026 #FNucleosome schedule, and we've got a great one lined up! Join us to hear about the outstanding research of @annanordin.bsky.social, @valentinabaderna.bsky.social, and @kezlane.bsky.social! register here: us06web.zoom.us/webinar/regi...
Join us on Wednesday for some great science before the world cup matches!!
🧬This Wednesday will be the final seminar of the Spring 2026 #FNucleosome schedule, and we've got a great one lined up! Join us to hear about the outstanding research of @annanordin.bsky.social, @valentinabaderna.bsky.social, and @kezlane.bsky.social! register here: us06web.zoom.us/webinar/regi...
Jackson Hoffman reposted
Excited to share the first pre-print from our lab!! Check it out here! www.biorxiv.org/content/10.6... We found that many RNA-binding proteins canonically understood to regulate RNA processing can also function like transcription factors and cofactors to directly regulate transcription.
Jackson Hoffman reposted
Jackson Hoffman reposted
Exciting breakthrough technology from the lab, now live in @cellcellpress.bsky.social ! Instead of cutting the genome where proteins bind (e.g., Cut&Tag), D&D-seq scars the DNA with a deaminase, allowing single cell genome mapping of TFs and chromatin remodellers!
Jackson Hoffman reposted
Jackson Hoffman reposted
See our handy graphical abstract and article for free here: bit.ly/4vsl845
Check out our new work in Cell Systems @cp-cellsystems.bsky.social! Much of the biochemistry in the cell is organized by biomolecular condensates, but what mechanisms control the distribution of a given condensate throughout the cell? And is this mesoscale organization important for function?
Jackson Hoffman reposted
Jackson Hoffman reposted
I am very grateful and excited about this opportunity! Big thank you to our fantastic team who have made this possible and to many supportive mentors 🙏
We are over the moon! 🎈 Dr. Marieke Oudelaar joins the MPI-IE as a new #MaxPlanck Director, heading the newly established Department of Genome Biology She studies how the 3D folding of DNA controls gene expression – more details below ⬇️ Welcome to #Freiburg, @mariekeoudelaar.bsky.social!
Jackson Hoffman reposted
Reminder that the Local Organic Intelligence Model located in your skull runs quite inexpensively on snacks and caffeine arstechnica.com/ai/2026/06/a...
We're starting in 45 minutes, register and join us to hear about the outstanding work Mark, Jake, and Sid are doing!
🧬🧬🧬 Join us this Wednesday, June 3rd for exciting talks from three early career chromatin/transcription researchers: Mark Geisler, @jcornwallscoones.bsky.social, and @sidujain.bsky.social! register here: us06web.zoom.us/webinar/regi...
Jackson Hoffman reposted
My Fragile Nucleosome seminar is now on YouTube www.youtube.com/watch?v=ksXp... I discuss our recent work showing that linker histone H1 behaves as a liquid-like glue for chromatin organization in living human cells 🧬 Paper: www.science.org/doi/full/10.... Huge thanks to @fnucleosome.bsky.social!
Jackson Hoffman reposted
Don’t miss Jake’s talk this Wednesday! @jcornwallscoones.bsky.social
🧬🧬🧬 Join us this Wednesday, June 3rd for exciting talks from three early career chromatin/transcription researchers: Mark Geisler, @jcornwallscoones.bsky.social, and @sidujain.bsky.social! register here: us06web.zoom.us/webinar/regi...
At this time tomorrow, you could be watching a couple of great chromatin talks from the future! While much of our audience will be watching these talks on Apr 22nd, Shabih Shakeel and @kazu-maeshima.bsky.social will be presenting on Apr 23rd!
🕛🕔🕗 Heads up! Fragile Nucleosome Seminar is at a special time this week: 2pm US West / 5pm US East / 10pm UK / 6am Tokyo / 7am Melbourne We'll have outstanding talks on chromatin from Shabih Shakeel and @kazu-maeshima.bsky.social !!! register here: us06web.zoom.us/webinar/regi...