Kari Hoffman

Kari Hoffman

@karihoffman.bsky.social

neuroscientist @vanderbilt studying neural circuit+population rules for creating and deploying knowledge. computational neuroethology.

2.5K followers216 following144 posts

Pinned

📣New paper! How does the sleeping brain help us to integrate new experiences while managing memories from the past? For his PhD work, @sabbaspoor.bsky.social recorded hippocampal ensembles in freely moving monkeys and found something unexpected. 🧵1/n www.nature.com/articles/s41... 🧪🧠📈👩‍🔬#OpenAccess

nature.comExperience reorganizes content-specific memory traces in macaques - Nature NeuroscienceIn macaques, old memories, relative to new ones, are supported by more stable and interconnected cell assemblies. New-biased and old-biased assemblies reactivate during overnight sleep and can sometim...

Kari Hoffman reposted

🔄 Uno reverse alert, PFC-HPC folks! This throws a spanner in the works of the simple “reuniens as relay” to hippocampus! 🏅Well crafted study. (Shoutout to my student @noahwillhite.bsky.social for tipping me off to it)

Andrew MacAskill@macaskillaf.bsky.social

Congrats @jespass.bsky.social on her new paper! PFC is widely thought to talk to HPC via nucleus reuniens - but no one has tested if this actual connectivity exists. Turns out it's wired to block it: PFC inputs to reuniens contact only neurons projecting back to PFC, not ones projecting to HPC. 🧪🧠📈

Kari Hoffman reposted

Excited to share our lab's recent paper showing that direct electrical stimulation of the human amygdala enhances recognition memory for objects but not scenes. The article is open-access, and we'd love to hear your thoughts! Please share! TY to everyone involved! www.nature.com/articles/s42...

🙌 ❤️🔥Yes to all the things. The 1st and 4th points may be related. Less about minimizing a reward error term and more about maximizing efficiency, allostasis.

Cian O'Donnell@cianodonnell.bsky.social

I gave a talk in our ISRC CN3 summer school yesterday on computational modelling of learning and memory, at the end I threw in a list of what I consider the big open questions in the the theory of learning in neural circuits. What did I miss??

Kari Hoffman reposted

Kari Hoffman reposted

Replying to @markhisted.org

Also, science needs to care about journalism too! The collapse of the US journalism industry (which is related to conspiracies and fractionation but not the only cause) is also a reason we are here.

Our findings suggest that memory consolidation could do more than stabilize isolated traces (or 'engrams'). Experience progressively links, reorganizes, and integrates neural assemblies allowing the primate brain to learn new information while preserving established memories. 11/n

Because we had laminar cell resolution, we could explore CA1 microstructure doi.org/10.1016/j.ce.... Superficial pyramidal cells contributed more strongly to new assemblies and predicted greater future drift. As memories aged, superficial + deep CA1 neurons became increasingly coordinated. 10/n

“Drifting assemblies” = gradual change in activation strength during the task, was greater for New assemblies. Was this drift due to member cells "competing" across fellow assemblies? No! The more exclusive an assembly's members, the greater the drift, i.e. integration->stabilization w/ time. 8/n

To more directly test this idea, we measured the local cohesiveness of assembly members. Cohesiveness increased with memory age: new < recent < old, suggesting that experience progressively embeds assemblies within more interconnected and potentially more stable networks. 9/n

The old metassemblies don't just co-activate more, they coordinate for LONGER ⏱️ Markov modeling and cross-correlograms show mutual reinforcement: half-widths can extended 500ms+, beyond the SWR window we’d assumed. --> The temporal reach of the metassembly groups grows with experience. 6/n

It looks like experience changes the likelihood and duration of coordination among assemblies, at least in this cross-sectional approach (Old/New). Inspired by @denisejcai.bsky.social, we wondered if experience-dependent change would also appear as gradual drift in task-related activation? 7/n

👀In sleep + SWRs, Old assemblies reactivated more strongly than New assemblies! Perhaps sleep reactivation isn't just benefiting consolidation of what's *NEW*, but also helps restructure or reinforce what's already learned. We further examined this idea of structuring of assemblies over time. 4/n

Old assemblies don't just reactivate more, they are more organized. When pairs of old assemblies reactivate together (or in opposition) during the task, the pattern is preserved in sleep; New assembly pairs also have such 'Metassemblies' in the task, but they aren't preserved in sleep. 5/n

📣New paper! How does the sleeping brain help us to integrate new experiences while managing memories from the past? For his PhD work, @sabbaspoor.bsky.social recorded hippocampal ensembles in freely moving monkeys and found something unexpected. 🧵1/n www.nature.com/articles/s41... 🧪🧠📈👩‍🔬#OpenAccess

nature.comExperience reorganizes content-specific memory traces in macaques - Nature NeuroscienceIn macaques, old memories, relative to new ones, are supported by more stable and interconnected cell assemblies. New-biased and old-biased assemblies reactivate during overnight sleep and can sometim...

The setup: macaques learned multi-touchscreen sequences in an immersive enclosure: a "new" or "recent" (1-day old) sequence on one side and an "old" sequence (learned ~6 weeks' prior) on the other, while we recorded from the hippocampus and connected regions during the task and then in sleep. 2/n

Distinct patterns of population activity (cell assemblies) represented the different sequence types (New/Old), and were better decoded than single-unit activity. --> The populations carried memory-specific information during the task. But what about sleep? Sharp-wave ripples? Reactivation? 3/n

Kari Hoffman reposted

One more nail in the coffin of the "it's just deconditioning" hypothesis. 60 days of strict bed rest ≠ #LongCOVID or #MECFS. Rob's group shows that while exercise capacity may be similarly reduced, the underlying skeletal muscle biology is VERY different. Time to move beyond outdated assumptions.

Tom Kindlon@tomkindlon.bsky.social

Rob Wüst, corresponding author of the new paper: "Skeletal muscle properties in long COVID and ME/CFS differ from those induced by bed rest" www.nature.com/articles/s41... Link to his full post www.linkedin.com/posts/rob-w%... #MEcfs #LongCovid

Kari Hoffman reposted

Kari Hoffman reposted

If an action results in error, each neuron requires an individualized teaching signal that guides change in its output. This is the credit assignment problem of learning. Are there neurons in the brain that can compute such a sophisticated teaching signal? Yes. www.biorxiv.org/content/10.6...

biorxiv.orgClimbing fibers encode the gradient of a loss function for the cerebellumNeurons in the brain are often many synapses away from motoneurons, yet if a movement results in error, each distant neuron needs a teacher that considers its specific contribution to production of th...

Kari Hoffman reposted

New paper alert from our lab! nature.com/articles/s41... We used stimuli sequences following 1/f statistical patterns—an ubiquitous statistical structure in natural stimuli—to probe predictive processing in the human brain. How does the brain predict upcoming sensory inputs based on past inputs?

nature.comNeural mechanisms of time-forward predictions for naturalistic auditory tone sequences - Nature CommunicationsA longstanding question is how the brain predicts complex, naturalistic sensory events and updates those predictions when expectations are violated. Using intracranial recordings, the authors show tha...

Kari Hoffman reposted

Olivia Guest is my favorite person to follow when it comes to calling out AI hype based on a deep and thoughtful understanding of it. This point is so very important. It's ok not to know things. #FollowFriday

Please consider not saying that some AI models or some statistical models are good, useful, beneficial, whatever else positive, in science if it's not your research area. It's ok not to know things. It's ok not to both side things. It's ok to ask colleagues who are experts.

Kari Hoffman reposted

Most people who develop #dementia don't have a family history of the disease. Interactions between vascular health, metabolism, environmental exposures, and *increasingly* pathogens also play a role. Brain aging starts decades before symptoms appear. 🧠 www.nature.com/articles/d41...

nature.comHow to avoid dementia — what the science really saysAmbitious studies have been examining the protective effects of diet, exercise and socializing — with surprising results.

Kari Hoffman reposted

I’m excited to share our latest preprint, and the main work from my PhD, on the role of the direct entorhinal input in hippocampus CA1 spatial coding. 1/9

bioRxiv Neuroscience@biorxiv-neursci.bsky.social

The emergence of a novel CA1 spatial map requires direct entorhinal input https://www.biorxiv.org/content/10.64898/2026.07.02.736055v1

Kari Hoffman reposted

Check out our @royalsociety.org Philosophical Transactions B theme issue, "The role of hippocampal prediction: bridging perception and memory." Thanks to all our fabulous authors, and my co-editors @peterkok.bsky.social and @mariamaly.bsky.social who dreamed it up and kept the train on the tracks.

Peter Kok@peterkok.bsky.social

The hippocampus sits at the interface of perception & memory, allowing us to link past, present, & future through its role in generating predictions. Excited to share this theme issue in @royalsociety.org's Philosophical Transactions B, co-edited with @barense.bsky.social & @mariamaly.bsky.social

Kari Hoffman reposted

Kari Hoffman reposted

Kari Hoffman reposted

Replying to @tyrellturing.bsky.social

let's talk in person! but fwiw I personally think that we talk about dimensionality! to me the important ideas within the neural manifold framework are: (1) manifolds reflect biological constraints, (2) capture population-wide functions/computations, (3) manifolds (may) have ontological power

🤩 + impressive answer 🧭🚕 @ 2:50 “Trust me, knowledge is power” 💀 This is my guy.

Hugo Spiers@hugospiers.bsky.social

Thanks to @cnn.com for covering our research on London taxi drivers in their new, rather chatty, format 'Creators' Taxi driver Tom Scullion is the star of this piece. He trains others to learn the knowledge an has so many insights into that process. #neuroskyence www.youtube.com/watch?v=K7df...

Kari Hoffman reposted

Good resp to Bhattacharya, noting the agenda of The Spectator. When we rebut Trump attacks on science it’s good to talk about his agenda and the agenda backing him—he was selected for the job by donors who want to privatize federal funding and use science as a wedge issue to get votes for thr side.

Prof Gavin Yamey MD MPH@gavinyamey.bsky.social

TBH, this piece by Jay Bhattacharya (published in The Spectator, a nasty right wing rag) and the NIH deputy director is truly one of the most vile things I've read coming from the Trump Administration They brag about how they "cured" DEI; WTAF? thespectator.com/topic/cured-...

Kari Hoffman reposted

www.science.org/doi/10.1126/... damn this is so very clever! "... we investigated how the brain categorizes stimuli that are not linearly separable in the physical world ... The sensory manifold was ... expanded into a seven-dimensional perceptual manifold..."

science.orgFrom sensory to perceptual manifolds: The twist of neural geometryThe brain uses geometric twists to expand neural dimensionality, thus untangling perception from sensation.

Human multipatch L2/3 functional cell types. LFG. 🧠📈🧪

Yangfan Peng@yangfanpeng.bsky.social

🥳Excited to share our latest human multipatch paper, now out in @natneuro.nature.com 🧠 We studied the cellular and synaptic physiology of human L2–3 pyramidal neurons and identified subtype-specific local connectivity rules across individuals. www.nature.com/articles/s41... Join us: penglab.de

Kari Hoffman reposted

Tolerance has gone too far. Researchers should date other people, in my opinion

Researchers have dated vertebrae from a massive prehistoric shark thought to have ruled the waves off northern Australia back to further in the Cretaceous period than was previously known.

Last day to register for the 50th anniversary meeting Jan 8-11: parkcitywinterconf.org/register/ Historical perspectives from Lynn Nadel, Os Steward, Jim McClelland, and topics from synaptic plasticity to neural circuit dynamics of learning and memory systems to aging and dementia. #neuroskyence

parkcitywinterconf.orgRegister – Park City Winter Conference
Kari Hoffman@karihoffman.bsky.social

📣Register now for the 50th Anniversary Park City Winter Conference on the Neurobiology of Learning and Memory parkcitywinterconf.org/register/ Deadline tomorrow, Friday, the 12th! Spread the word. 🧠🔬👩‍🔬 ➡️Top 5 reasons to attend: 1/6

Nice thread (and nice recognition for @trackingactions.bsky.social!)

Nicole Rust@nicolecrust.bsky.social

I regard what I/we do as impt for humanity (not vanity), and I spend a lot of time mapping out how to get to those end goals efficiently (like in this recent book). Unfortunately, I don't see paths to better treatments that don't involve animal research. press.princeton.edu/books/hardco...

Kari Hoffman reposted

Replying to @juangallego.bsky.social

We give examples for less striking number of neurons here. For different species, tasks, and brain areas, it's always the same observation: PCA overestimates the dimensionality -except for one very simple task- and this overestimate gets worse w the number of neurons www.biorxiv.org/content/10.1...

biorxiv.orgNonlinear manifolds underlie neural population activity during behaviourThere is rich variety in the activity of single neurons recorded during behaviour. Yet, these diverse single neuron responses can be well described by relatively few patterns of neural co-modulation. ...