Peiwei Chen

Peiwei Chen

@peiwei-chen.bsky.social

HHMI Hanna Gray Fellow & Postdoc with Andy Clark and Cedric Feschotte at Cornell | selfish genetic element, transposon, small RNA, evolution peiweichen.com

348 followers288 following103 posts

Pinned

How do transposons jump when they’re released from host control? I babysat two chromosomes for 2 years, making sure they are ok without most piRNAs. Here’s what we found & excited to share my 1st postdoc paper: “piRNA loss unleashes episodic transposition bursts” www.biorxiv.org/content/10.6...

biorxiv.orgpiRNA loss unleashes episodic transposition burstsIn Metazoa, transposon expression is suppressed by the piRNA pathway, and disruption of this pathway leads to rampant transposon expression. However, it remains unclear whether increased transposon ex...

happy to share that our preprint graduated from bioRxiv & out now at PNAS @pnas.org so many questions to follow up on - mechanistic, evolutionary, and everything in between... stay tuned for more transposon jumping 😆 "piRNA loss unleashes episodic transposition bursts" www.pnas.org/doi/10.1073/...

pnas.orgPNASProceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...

honored to receive the community engagement award this year 😊 we made an onboarding handbook for *ALL* postdocs at Cornell, and we organize monthly professional development workshops for postdocs across departments - truly a team effort!! news.cornell.edu/stories/2026...

news.cornell.eduAchievement awards honor postdoctoral researchers and faculty mentors | Cornell ChroniclePostdoc Achievement Awards recognize postdocs who made outstanding contributions to the Cornell community, as well as faculty who provided exceptional mentorship to postdocs.

Peiwei Chen reposted

@joethorntonlab.bsky.social and I are thrilled to co-organize the 2027 Molecular Mechanisms in Evolution GRC, June 13–18, in beautiful Portland, Maine! See our ⭐stellar⭐ lineup of speakers ⬇️ spanning evolutionary biochemistry, cell biology, development, behavior... www.grc.org/molecular-me... 1/n

grc.org2027 Molecular Mechanisms in Evolution Conference GRCThe 2027 Gordon Research Conference on Molecular Mechanisms in Evolution will be held in Portland, Maine. Apply today to reserve your spot.

Peiwei Chen reposted

Peiwei Chen reposted

My PhD defense is October 23! 🥹💜 So many people in this community have supported and encouraged me throughout my PhD, and I'd love to share this milestone with you all. I'll be defending virtually at 2 PM CT, and everyone is welcome! RSVP for the Teams link: forms.gle

forms.gleforms.gle

❤️

40 years ago today, the BDSC made its 1st shipment. To celebrate, Trudy Kaufman, who packed the 1st shipment, boxed up the same kinds of flies for John Roote at Cambridge, who placed the 1st order. Watch for pics of the arrival next week. We’ve shipped 4,882,378 vials total. That’s a lot of flies!

Peiwei Chen reposted

Peiwei Chen reposted

Peiwei Chen reposted

Now that we have moved coasts, I am thrilled to share that the ChromEvo (Raman) lab is officially open at UMass Boston 🎉 We ask how CHROMatin EVOlution leads to functional innovation and we are hiring at multiple levels. Read on and share with folks who maybe interested chromevoramanlab.github.io

Peiwei Chen reposted

Replying to @ching-hochang.bsky.social

Thrilled to share that our paper is finally out in Science Advances! 🔗 www.science.org/doi/10.1126/... TL;DR: A Drosophila protamine acts as shields resolving conflict between X and Y chromosomes. Disruption unleashes meiotic drive that kills X-bearing sperm and skews progeny sex ratios. 🪰🧬ᯡ

science.orgRapid protamine evolution suppresses meiotic drive in DrosophilaMany animal species replace histones with protamines during spermatogenesis. Although essential for sperm function, protamines evolve rapidly for reasons that remain unknown. Using in vivo gene replac...

Peiwei Chen reposted

We generated chromosome scale assemblies of house flies with different Y chromosomes. You won't believe what happened next!

bioRxiv Genomics@biorxiv-genomic.bsky.social

X-Y divergence of house fly (Musca domestica) proto-sex chromosomes follows distinct evolutionary trajectories despite residing in the same genome https://www.biorxiv.org/content/10.64898/2026.09.26.754726v1

Peiwei Chen reposted

Looking for a postdoc? I know a really good candidate who's seeking a position. Great abstract thinker, strong evo/popgen background and CPU & statistical skills, some math & wet lab exp. Boundless curiosity, scholarly, helps everyone. High impact paper from PhD so far. Message me for details!

Peiwei Chen reposted

I'm excited to share our new preprint: Generation of a transgenic cephalopod tinyurl.com/pc86jxz8 Cephalopods (cuttlefish, octopus & squid) are crazy critters that dynamically camouflage to their surroundings by changing the color, pattern, & texture of their skin, which they control w their brain.

Peiwei Chen reposted

🩸🩸🩸TODAY WE SHARE TWO MAJOR DISCOVERIES🩸🩸🩸 1. We peered into genomes and brains of the rare mosquitoes that QUIT feeding on blood and found what biting is built from 2. Humans got rid of isoleucine in their blood, malaria suffers from it, and mosquito proteomes budget for it THREADS>

Is it a gene or a transposon? 🤔

Cedric Feschotte@cedricfeschotte.bsky.social

Thrilled to see this published today! Truly special because we made the initial discovery >15 yrs ago! We found two copies of a human gene called BC200 embedded in a human poxvirus. BC200 blurs the line between gene & transposon—both functional & mutagenic! www.science.org/doi/10.1126/... 🧵1/n

Peiwei Chen reposted

Thrilled to see this published today! Truly special because we made the initial discovery >15 yrs ago! We found two copies of a human gene called BC200 embedded in a human poxvirus. BC200 blurs the line between gene & transposon—both functional & mutagenic! www.science.org/doi/10.1126/... 🧵1/n

science.orgEscape of the BC200 gene to a human poxvirus reveals its persistent transposition in primatesTransposable elements mobilize within and occasionally between genomes, including from host to virus. We identified two insertions of the human BC200 noncoding RNA gene in the poxvirus molluscum conta...

Peiwei Chen reposted

Incredibly excited to share my new preprint! 🪰🧬 Ever wondered how germ cells can specify their fate without having a dedicated transcriptional program? We found that germ cells keep the uncommitted chromatin state of the early embryo www.biorxiv.org/content/10.6...

biorxiv.orgDecoupling Transcription from Cell Fate Preserves Germ Cell TotipotencyOnly germ cells can give rise to a totipotent embryo, yet a conserved transcriptional program for germ cell identity remains elusive. Profiling Drosophila primordial germ cells (PGCs) across embryogen...

Peiwei Chen reposted

VIPR is now out in Science! What started with a mysterious RNA led us to an unexpected way of recognizing DNA, as well as some clues to CRISPR’s origins. So happy to share these two papers with an incredible team. Links below; original discovery thread here ↓

Kenneth Loi@kenjmloi.bsky.social

Excited to share our discovery of a new programmable RNA-guided DNA-targeting system hiding inside bacteriophages that predates CRISPR. We call it VIPR (Viral Interference Programmable Repeat), and it uses an entirely new logic to find its targets. Thread + link below.

Peiwei Chen reposted

Peiwei Chen reposted

I am excited to share that I will be joining the Baker Institute for Animal Health and College of Veterinary Medicine at Cornell University as an Assistant Professor next spring! I am grateful to my mentors and colleagues who have supported me throughout this journey.

Peiwei Chen reposted

Peiwei Chen reposted

Peiwei Chen reposted

We are recruiting a PhD student 🥼🙋 Topic: how germ cells bend gene expression dogmas Fly genetics + proteomics + genomics. Fully funded. Aarhus University 🇩🇰 info on the project and how to apply👇 mbg.au.dk/en/peter-and... I'd really appreciate it if you'd help spread the word. Thanks

Peiwei Chen reposted

Bet you didn't have "John Pool starts youtube channel" on your 2026 bingo card! Emphasis on native landscaping / sustainability, & evolution/genetics for a general audience. If you watch, please let it play through (else youtube thinks it's bad). Feel free to share! www.youtube.com/channel/UCj8...

youtube.comLife On EarthIn "Life On Earth", Professor John Pool delves into topics ranging from the natural world to life in general. He shares his iconic Wisconsin prairie style home, his native landscaping efforts, and hi...

Peiwei Chen reposted

How long does DNA damage last? @aaronquinlan.bsky.social and I found evidence that lesions are transmitted from parent (P0) to offspring (F1) in C. elegans. If they segregate unrepaired for multiple cell divisions, lesions generate multi-allelism in the F1 germline. www.biorxiv.org/content/10.6...

biorxiv.orgInherited DNA damage generates multi-allelic mutations in C. elegansExogenous and endogenous mutagens generate a wide variety of DNA lesions, including bulky adducts, chemical modifications, and single- or double-stranded breaks. A phenomenon called “lesion segregation,” in which lesions evade repair and persist for multiple cell divisions, has recently been documented in tumors and healthy somatic tissues from mice and humans, respectively. Persistent lesions can generate multi-allelic variants (MAVs) by serving as templates for multiple rounds of error-prone replication. By reanalyzing data from a large C. elegans mutagenesis experiment, we observed robust evidence for MAVs at a small fraction (∼0.2%) of mutated sites in the offspring of strains treated with alkylating agents. Because these sequencing data were derived from the progeny of a single F1 animal — itself the offspring of a mutagenized P0 — all mutations should be biallelic. The presence of multi-allelic variation implies that some DNA lesions are transmitted to the F1 zygote, evade repair, and are repeatedly bypassed by error-prone polymerases during embryogenesis. We suspect that many more lesions are inherited than is suggested by MAV prevalence, and that a large fraction of biallelic mutations are also caused by inherited lesions. Our results demonstrate that DNA lesions serve as durable, transgenerational templates for mutagenesis in C. elegans . We speculate that lesion segregation in the early embryo may be a source of mosaicism and genetic diversity in humans, as well. ### Competing Interest Statement The authors have declared no competing interest. National Institutes of Health, https://ror.org/01cwqze88, R01HG012252

Peiwei Chen reposted

Finally - the 🧵! So, the piRNA pathway defends the animal germline from transposons. But most of what we know comes from narrow developmental windows like late oogenesis, where it's easiest to study. We asked if the pathway is the same across development. It is not! /+

Peter Andersen@germline.bsky.social

We watched piRNAs and transposons across development, saw them dance tightly and wrote a paper about it. It's so cool to see it online and we will make a thread about it all very soon. Stay tuned :-)

Peiwei Chen reposted

We watched piRNAs and transposons across development, saw them dance tightly and wrote a paper about it. It's so cool to see it online and we will make a thread about it all very soon. Stay tuned :-)

bioRxiv Genetics@biorxiv-genetic.bsky.social

A developmental switch in the piRNA pathway ensures stage-specific transposon silencing https://www.biorxiv.org/content/10.64898/2026.08.28.747770v1

Peiwei Chen reposted

What does it take to evolve a new trait? We have a new paper out that uses the Drosophila sex comb—a male-specific grasping structure found in a subset of drosophilids—as a model to answer this question 1/11

PLOS Biology@plosbiology.org

What are the genetic mechanisms for the #evolution of novel traits? This study by @brhopkins92.bsky.social &co links #Drosophila sex comb teeth to expression changes within ancestral cells, leading to diverged metabolic/developmental rates, and a novel structure. 🧪 #AcademicSky plos.io/4gQOnZK

Peiwei Chen reposted

Job alert! We are hiring a Lab Assistant II to support the construction and analysis of cell villages. This position is a great opportunity to contribute to several ongoing projects while learning cutting-edge cell culture approaches. DM me with questions. Apply here: tinyurl.com/wellslabtech

tinyurl.comLaboratory Assistant II - Human Genetics - UCLA Health Careers - Job #32203 - Los Angeles, CATake a look at a great career opportunity where you can make a real difference at UCLA Health

Peiwei Chen reposted

BLink-seq is out! Linked-read sequencing that brings phased whole-genome data to non-model species at population scale. We show it phases haplotypes and detects SVs, revealing previously undocumented structural complexity in an adaptive Atlantic silverside inversion. www.biorxiv.org/content/10.6...

biorxiv.orgBLink-seq delivers population-scale haplotypes without long reads: a scalable framework for non-model genomicsInformation about segregating haplotypes and structural variation (SV) can be extremely rich for a variety of applications in population genomics but remains largely inaccessible for many non-model sp...