Ingrida Olendraite reposted
Ingrida Olendraite
Ingrida Olendraite
@ingrida.bsky.social
Passionate about Microbes and Biodiversity. Bioinformatics. Novel Molecular Biology, RNA viruses and RdRp. Bioinformatician EMBL-EBI
372 followers93 following85 posts
Join us! What a name, @urineri.bsky.social - creativity and passion for virus research never stops to amaze me!
#RNAVirusJournalClub! The co-founder of RdRp Summit @urineri.bsky.social will introduce the #RolyPoly - a python library for various common virus analysis tasks. 🍁Thur, October 8th, 8am London time. 🍁 Hosted by the RdRp Summit 2027 lead: @marcoforgia.bsky.social 🍁 All welcome! 😊 #RdRpSummit
Join tomorrow! / Friday the 25th! Deep phylogeny of RNA viruses is quite an important topics :) can structural RdRp comparisons help?:))
RNA virus Journal Club is back with structural phylogeny by Dr. Heli Mönttinen @helsinki.fi ! Tomorrow! 🍁 September 25th, Fri at 14.00-15.00 Helsinki time.🍁 Hosted by one and only: @deminatanja.bsky.social Everyone welcome to join! 😊 Check comment links! #RdRpSummit #RNAVirusJournalClub
Ingrida Olendraite reposted
Me, @emma-harding.bsky.social, @rtarlinton.bsky.social and @royalsociety.org are organising a meeting on endogenous viral elements! 8-9 Feb 2027, Birmingham UK. 2 whole days of EVEs! Many amazing researchers already agreed to speak. Invites: shorturl.at/jp9sh Provisional schedule: shorturl.at/8O5KV
Ingrida Olendraite reposted
How can we harness the vast functional diversity of microbes on our planet? Join us at EMBL Heidelberg from 8–10 December 2026 to hear about ongoing efforts to decode gene function and organisation in human gut microbes, and to present your own research. www.embl.org/about/info/c...
3 days full of evolution, divergent orthomyxos/chuviruses and mosquitoes - thank you @evogytis.bsky.social for an invite to Puvociai retreat & discussions with his team & polycipi-ally Serafín Gutiérrez! ☀️ eclipse + meteorite showers 🌠 - perfect for late-night scientific (and life) talks.
Serafin ( @cirad.bsky.social ) has shared his very interesting work on plant #multipartite virus genomes☘️. Have you ever thought of what evolutionary advantage is to have multipartite vs segmented and packed into one particle genomes? How gene copy numbers vary depending on who is the host?
...and of course all work done by @evogytis.bsky.social : from phylogeography to everything about orthomyxas and the intriguing chuviruses. Thanks for bringing us all together! Massive shout out to @mgabrielaite.bsky.social on all organization and her bacterial work!
3 days full of evolution, divergent orthomyxos/chuviruses and mosquitoes - thank you @evogytis.bsky.social for an invite to Puvociai retreat & discussions with his team & polycipi-ally Serafín Gutiérrez! ☀️ eclipse + meteorite showers 🌠 - perfect for late-night scientific (and life) talks.
I shared how we work and what we do at #MGnify, the FAIR scientific data principles and about open data and resources at @ebi.embl.org . Can we - virology community - learn from bacterial metagenomics approaches and improve broad-scale virology efforts?
@spyroslytras.bsky.social is one of the most inspiring researchers of our cohort and while extremely fun to be around, also intelligent, smart and innovative. I couldn't wish for a better PI - anyone looking for their postdoc and moving to Paris?:) Sharing is caring! #job #position #postdoc
🚨 JOB ALERT🚨 We are very excited to be hiring the lab's ✨very first postdoc✨! Work on new AI technologies for decoding antigen protein evolution in a fresh research environment, at the heart of Paris 🇫🇷 Details & link to apply: research.pasteur.fr/en/job/postd... Deadline: Sep 1st
Ingrida Olendraite reposted
🚨VIROMICS WORKSHOP 2026🚨 Application is now OPEN for the 8th International Viromics Workshop, Oct. 14-16, 2026, in-person at Ohio State University. Application closes Aug. 7. Apply: forms.gle/pJFLDCNEBvAe... Full details: u.osu.edu/viruslab/vir... #viromics #viruses #ecology #workshop
Ingrida Olendraite reposted
Very excited to share our paper (and first for my PhD) on RdRpCATCH in NAR Genomics and Bioinformatics! doi.org/10.1093/narg... Co-authors: @urineri.bsky.social, @ingrida.bsky.social, Justine Charon, @sho1.bsky.social, @xinhou.bsky.social, Dick de Ridder, Mark P. Zwart, and @annecmg.bsky.social
Ingrida Olendraite reposted
Our review on the role of metagenomics in the future of One Health is now published in One Health Outlook @eddieholmes.bsky.social link.springer.com/article/10.1...
Ingrida Olendraite reposted
What matters most for childhood brain organization? We analyzed 649 variables. The answer: Socioeconomics (SES); with brain patterns pointing at sleep & stress as drivers. Even brain-IQ associations were better explained by SES. In Science today: www.science.org/doi/10.1126/...
Ingrida Olendraite reposted
🚨 Registration for VEGA26 is 👏 officially open 👏 🚨 The 5th edition of our Viral EcoGenomics and Applications symposium will be held November 18-19, 2026, on the UC Berkeley campus 🧬 🦠 🔬 🧫 Event website ➡️ jgi.doe.gov/work-with-us... Registration link ➡️ cvent.me/e0RnA0
Ingrida Olendraite reposted
📢 Join us for the next Viruses in silico webinar lecture! 🎙️ "The ICTV at Sixty Years: Classifying the Worldwide Virosphere" 👨🔬 Elliot J. Lefkowitz (University of Alabama at Birmingham, US) 🗓️ 25 June 2026 🕑 4 PM CEST 📍 Zoom - Register to receive the login details 👉 evbc.uni-jena.de/events/virus...
It's today - don't miss it - simply click on zoom link below to join, no registration needed :) but adding it to your calendar for a reminder - suggested ;) @rdrpsummit.bsky.social
RNA virus Journal Club is back after the pause for #ViBioM2026 📚 June 11th | Thursday, 15:30 Central European Time. AmpliDiff: a tool to find discriminatory genomic regions in viral genomes of a single species! Perfect for primer design! Join, talk & discuss! Details ⬇️ @rdrpsummit.bsky.social
RNA virus Journal Club is back after the pause for #ViBioM2026 📚 June 11th | Thursday, 15:30 Central European Time. AmpliDiff: a tool to find discriminatory genomic regions in viral genomes of a single species! Perfect for primer design! Join, talk & discuss! Details ⬇️ @rdrpsummit.bsky.social
Zoom link to join AmpliDiff talk - new comers, long-time-no-see, just-a bit-curious - everyone welcome :) RNA Virus Journal Club Time: Jun 11, 2026 03:30 PM Paris Join Zoom Meeting us02web.zoom.us/j/8258756616... Meeting ID: 825 8756 6169 Passcode: 406800
RNA virus Journal Club is back after the pause for #ViBioM2026 📚 June 11th | Thursday, 15:30 Central European Time. AmpliDiff: a tool to find discriminatory genomic regions in viral genomes of a single species! Perfect for primer design! Join, talk & discuss! Details ⬇️ @rdrpsummit.bsky.social
Amplidiff publication: link.springer.com/article/10.1...
RNA virus Journal Club is back after the pause for #ViBioM2026 📚 June 11th | Thursday, 15:30 Central European Time. AmpliDiff: a tool to find discriminatory genomic regions in viral genomes of a single species! Perfect for primer design! Join, talk & discuss! Details ⬇️ @rdrpsummit.bsky.social
June 11th Journal Club: times and topic, all information available: rdrp.io/journal-club... Thank you @marcoforgia.bsky.social and Laura Patino for organising and the wizzard @sho1.bsky.social for organising all the information!
Ingrida Olendraite reposted
. @davidlrobertson.bsky.social is chairing the phylogenomics session of #VibioM2026 ; Great talks 👏 from @evogytis.bsky.social @willharv.bsky.social
Ingrida Olendraite reposted
We’re excited to highlight our invited keynote speakers at #ViBioM2026 🎉 🗓️ Mon 18 May – Rayan Chikhi (@rayanchikhi.bsky.social) 🗓️ Tue 19 May – Darius Kazlauskas (@dariusbio.bsky.social) 🗓️ Wed 20 May – Mathias Munschauer (@munschauerlab.bsky.social) 👉 evbc.uni-jena.de/events/vibio...
Ingrida Olendraite reposted
this joy: from morning till late night talks - wouldn't have happened without massive helpof @evogytis.bsky.social team, without the most organised person ever Maria & the soul of @evbc.bsky.social for 9 years: Manja Marz who created this fantastic relaxed and fun research family (truly).
Ingrida Olendraite reposted
We had an amazing time at #ViBioM2026 last week in Vilnius 🇱🇹🤝 Researchers from around the world shared insights on virus #metagenomics, #phylogeny, protein & RNA biology, and #ML approaches. Huge thanks to all organizers, helpers, and our sponsors (GoVilnius, Viruses/MDPI, @febsopenbio.bsky.social)!
Ingrida Olendraite reposted
🏗 Working on virus #bioinformatics tools or data curation? Interested in building lasting, open-source workflows? 🛠 Join the satellite #hackathon at #ViBioM2026, online or in Vilnius! 👉 More information and registration until 8 May: evbc.uni-jena.de/events/vibio...
Book by Thursday of this week! (April 30th) :) Can't wait to hear from the most amazing virus bioinformaticians :)) Literally last change :) while everyone who registered - excited to meet you in Vilnius :)
⏲️Deadline approaching! 2 days left to register for the International Virus Bioinformatics Meeting in Vilnius! Join the community at ViBioM 2026 for talks, posters & networking. 🗓️ Registration closes: 30 April, 23:59 CEST 🔗 evbc.uni-jena.de/events/vibio... #ViBioM2026 #virology #bioinformatics
#ViBioM2026 is not just in the next few weeks, but also has a fabulous satellite event (different projects different days, between May 12-17). Don't forget to register, explore the projects, suggest your own!
🏗 Working on virus #bioinformatics tools or data curation? Interested in building lasting, open-source workflows? 🛠 Join the satellite #hackathon at #ViBioM2026, online or in Vilnius! 👉 More information and registration until 8 May: evbc.uni-jena.de/events/vibio...
Now !:)
RNA virus Journal Club is on! 🌳March 17th | Tuesday, 10 AM Berkeley time / 18 PM CET 🕰️ You've probably heard about the meta-virus resource? We will get to dive into metaVR database & huge viral diversity within thanks to @mattlabguy.bsky.social 🥳 All welcome! Details ⬇️ @rdrpsummit.bsky.social
RNA virus Journal Club is on! 🌳March 17th | Tuesday, 10 AM Berkeley time / 18 PM CET 🕰️ You've probably heard about the meta-virus resource? We will get to dive into metaVR database & huge viral diversity within thanks to @mattlabguy.bsky.social 🥳 All welcome! Details ⬇️ @rdrpsummit.bsky.social
Final gem: 📖 publication: academic.oup.com/nar/article/... 📚 metaVR database: www.meta-virome.org and all the info about March 17th event: rdrp.io/journal-club/ See you soon!
RNA virus Journal Club is on! 🌳March 17th | Tuesday, 10 AM Berkeley time / 18 PM CET 🕰️ You've probably heard about the meta-virus resource? We will get to dive into metaVR database & huge viral diversity within thanks to @mattlabguy.bsky.social 🥳 All welcome! Details ⬇️ @rdrpsummit.bsky.social
Thanks for hosting @deminatanja.bsky.social ! Join us on Zoom: helsinki.zoom.us/j/6382189703... Meeting ID: 638 2189 7037 Passcode: 887025 Or join RdRp summit community @rdrpsummit.bsky.social slack: join.slack.com/t/rdrp-io/sh...
RNA virus Journal Club is on! 🌳March 17th | Tuesday, 10 AM Berkeley time / 18 PM CET 🕰️ You've probably heard about the meta-virus resource? We will get to dive into metaVR database & huge viral diversity within thanks to @mattlabguy.bsky.social 🥳 All welcome! Details ⬇️ @rdrpsummit.bsky.social
Click here and add it to your calendar (useful for timezones): rdrp.io/journal-club...
Ingrida Olendraite reposted
Paper alert 📢: What drives variation in humoral responses to viruses? collab with @etienne-patin.bsky.social @darraghduffy.bsky.social @lquintanamurci.bsky.social we show that for ~98k viral epitopes immunodominance vary by genetics, sex and origin: www.nature.com/articles/s41...
Hooray 🎉 from virologists! :)
The AlphaFold Database, jointly developed with Google DeepMind, now contains datasets from specialist communities. This includes rich datasets for microbes, viruses & parasites associated with tropical diseases. Explore the new datasets in the AlphaFold Database. www.ebi.ac.uk/about/news/u...
I cherish this mug so much that I don't even use it for liquids.. And it's from the 1993 my beloved paper by Dolja and Koonin. I will forever be grateful for @thekatybrown.bsky.social for such a thoughtful gift! :) Their work was also what got me into virology without any hesitation:)
Milica Raco hosting the prof Dolja! :) Join us on Zoom: oregonstate.zoom.us/j/9426515785... RNA virus club by @rdrpsummit.bsky.social
what can be better than global RNA virome and Dolja? Nothing for me.. :) Join RNA virus club (by @rdrpsummit.bsky.social ) already tomorrow: Thu, Feb 12, 11:00 AM Pacific Time (US 🇺🇸, Canada🇨🇦) (or 7pm London time 🇬🇧) for an hour with one and only Prof. Valerian Dolja (Oregon State University)
You can add Prof. Dolja's talk/ @rdrpsummit.bsky.social event to your calendar by one click here: rdrp.io/journal-club... Or join us on the RdRp summit slack (join.slack.com/t/rdrp-io/sh...) Or if you want to simply join the zoom: oregonstate.zoom.us/j/9426515785... Password: 609697
Remember? RNA virus journal club is already this Thursday! 🤩 Join us and join our (RdRp summit) slack (link in the comment): calendar.app.google/K2fwcsL78K1E... RNA Virus Journal ClubJoin Zoom Meeting us02web.zoom.us/j/8109697228... Meeting ID: 810 9697 2281 Passcode: 174610
Save the date for phylogenetics! RNA virus Journal Club returns ( @rdrpsummit.bsky.social ) with @evogytis.bsky.social intro to his "Baltic" - python module to visualise phylogenetic trees. January 15th (Thu) - EEST Vilnius Time 3:00 PM Join slack for updates: join.slack.com/t/rdrp-io/sh...
Save the date for phylogenetics! RNA virus Journal Club returns ( @rdrpsummit.bsky.social ) with @evogytis.bsky.social intro to his "Baltic" - python module to visualise phylogenetic trees. January 15th (Thu) - EEST Vilnius Time 3:00 PM Join slack for updates: join.slack.com/t/rdrp-io/sh...
Ingrida Olendraite reposted
Loved this brilliant biography of Crick by @matthewcobb.bsky.social But what struck me from the start: it's also a portrait of a lost time in science: no grant applications or teaching, big travel budgets: the job only to think, talk & get science done. Future scientific biogs will be so different.
It's today! December 11th Finding endogenous viral elements in genomic data 🧑💻 by Sebastian Lequime (University of Groningen @rug.nl ) Time: 2pm EST🇺🇸 / 8pm CET 🇪🇺 / 4am JST 🇯🇵 Join @rdrpsummit.bsky.social RNA Virus Journal Club talk & discussion: oregonstate.zoom.us/j/9164101918... #rdrpsummit
Ingrida Olendraite reposted
Expressions of interest are now open to host the @isvm-society.bsky.social #VOM28 conference. Let us know if you'd like to host the world's leading conference on viruses of microbes! isvm.org #phagesky #virus
RNA Virus Journal Club – Upcoming Talk - this thursday (Nov 6th !) With @rdrpsummit.bsky.social - excited to announce talk and discussion with Dr Sanguu Kim about HF nanopore sequencing strategy for virology :) calendar.app.google/oyRVP6v5Tvjg... CET: 14:00–15:00, Format: 30 min + 30 min