Making Molecules

Making Molecules

@makingmolecules.com

Making molecules - trying to explain chemistry one page at a time. One page summaries and more wordy descriptions found at: https://www.makingmolecules.com

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The follow-up to the #ChemEd #Chemistry #ChemSky summary introducing mass spectrometry. I've now published the blog version and it can be found at the link below. It has a little more detail, lots more pictures & is hopefully a nice expansion of the summary. The 1 page summary below as well. Enjoy

makingmolecules.comAn Introduction to Mass Spectrometry — Making MoleculesMass spectrometry is a useful tool that allows the identification of unknown compounds and the quantification of known compounds. Mass spectrometry is used to detect drug taking in sports, inform doct...
Making Molecules@makingmolecules.com

Something different, a #ChemEd #Chemistry #ChemSky intro to mass spectrometry. It just gives a high level overview, focusing on the spectrum, the peaks (molecular ion, isotope & fragment peaks) & the types of data (not how it is generated) & the 'fun' of different definitions for mass.

Something different, a #ChemEd #Chemistry #ChemSky intro to mass spectrometry. It just gives a high level overview, focusing on the spectrum, the peaks (molecular ion, isotope & fragment peaks) & the types of data (not how it is generated) & the 'fun' of different definitions for mass.

This is written by a user of mass spectrometers not a mass spectrometrist (there is a big difference). I'll happily correct errors. Soon I'll post a blog version with more detail/background & a rant about 'experts on the internet' & how they take the fun out of these summaries.

This #ChemEd #Chemistry #ChemSky is a stopgap. It wasn't made for MakingMolecules.com (there is no blog post (& different colours)). It wasn't written for students but was written to jog my memory (guess what I'm doing this week is?). Disclaimer done! I hope someone else finds it useful. Enjoy?

The next #ChemEd #Chemistry #ChemSky 1-page intro covers common [3,3]-sigmatropic rearrangements. Lovely reactions that are a nice way to form C-C bonds with good control of stereochemistry from readily formed precursors. As always, it's just an intro, no orbitals & no Woodward-Hoffmann. Enjoy.

There will be a longer blog over at www.makingmolecules.com soon(ish), I've just got to type-up my handwritten notes (no AI for some of us). But could be worse, I've recently learnt that Neal Stephenson's Baroque Cycle was handwritten (a stack of pages 42 inches high).

makingmolecules.comMaking MoleculesOrganic chemistry summaries. 1 page summaries of key concepts in organic chemistry. Mostly aimed at undergraduate chemistry or university level organic chemistry.

As promised in the previous #ChemEd #Chemistry #ChemSky post, I have written a more wordy/detailed overview of 1,3-dipolar cycloadditions. It is available below: I stress it is still an introduction but allows me to words/explanation than I can on a one-page summary. Hope it is useful, enjoy.

makingmolecules.com1,3-Dipolar Cycloadditions — Making MoleculesCycloadditions provide a controlled method for the construction of ring systems. 1,3-Dipolar cycloadditions form five-membered heterocycles. Electronically, these reactions involve 4+2 π electrons &am...
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This #ChemEd #Chemistry #ChemSky summary introduces 1,3-dipolar cycloadditions. It builds on the Diels-Alder 1 pagers & is another [4+2] cycloaddition but gives 5-membered rings. It is only an intro. More details will be on makingmolecules.com as soon as I've typed up my notes. Enjoy!

This #ChemEd #Chemistry #ChemSky summary introduces 1,3-dipolar cycloadditions. It builds on the Diels-Alder 1 pagers & is another [4+2] cycloaddition but gives 5-membered rings. It is only an intro. More details will be on makingmolecules.com as soon as I've typed up my notes. Enjoy!

My 1st #Chemistry #ChemEd #ChemSky summary on pericyclic reactions (more to follow) & it is on the Diels-Alder reaction. This is a fantastic reaction but I only cover the basics. Bond formation, regioselectivity (very simplistically) & a comment on exo vs endo. No Woodward-Hoffmann rules. Enjoy.

As promised, a #ChemEd #Chemistry #ChemSky summary introducing enamines as enolate equivalents. It's only an intro so covers formation + 3 reactions. No regio- or stereoselectivity even though they're fun. I did include the catalytic cycle from enamine organocatalysis as people expect it. Enjoy.

After enols & enolates, here's a #ChemEd #Chemistry #ChemSky on enolate equivalents. These allow control of selectivity & permit stereoselective enolate chemistry (something I love & will eventually write a summary on). Here is formation & aldol-like reaction. Enamines will get their own summary.

Breaking radio silence with 2x #ChemEd #Chemistry #ChemSky summaries of aldol-like rcts. These are just lists of reactions without the explanation of the last couple of summaries. One tries to include mechanisms. More a stop gap than anything else. Hopefully, someone will find them useful. Enjoy.

Having introduced the aldol, here is a #ChemEd #Chemistry #ChemSky summary of the more common named variants. They're all the same reaction (just the electrophile/nucleophile changes; see reply). The mechanism is the same. Don't let the names mislead you. Hopefully it is useful to some.

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The obvious next post after looking at enols/enolates is the aldol reaction. The aldol reaction is an impressive beast used by both nature and chemists. This #ChemEd #Chemistry #ChemSky summary is just the intro. There will be more over the coming weeks. I hope UG enjoy this!

The obvious next post after looking at enols/enolates is the aldol reaction. The aldol reaction is an impressive beast used by both nature and chemists. This #ChemEd #Chemistry #ChemSky summary is just the intro. There will be more over the coming weeks. I hope UG enjoy this!

Enolates (& their equivalents) are one of the cornerstones of many a good synthesis. So here is a #Chemistry #ChemEd #ChemSky intro to their formation & general reaction. More details on the aldol reaction & enolate equivalents will be in subsequent summaries. Enjoy.

The 1st of a few #ChemEd #Chemistry #ChemSky summaries related to enols/enolates/etc. This one covers keto-enol tautomerization and two reactions of enols. As always, it is just meant to cover the basics. It is a summary to refresh/support students' memories. As such, I hope it is of some use.

The obligatory summary of a summary and a table of E1 vs E2 vs Sn1 vs Sn2. Hopefully, this is of use to some, but if I'm brutally honest, it was just a quick stop gap while I work on more fun #ChemEd #Chemistry #ChemSky summaries (currently writing ones on cycloadditions and rearrangements). Cheers

A contentious #ChemEd #Chemistry #ChemSky summary covering rates of reaction. It is the textbook version & is wrong if you understand kinetics ;) I'll add references showing why as a reply. It's here as most UG still learn it. Hopefully it is useful & doesn't cause too many misconceptions

I have posted an erroneous summary for 2 (v. poor) reasons: 1) It agrees with the textbooks, so is what most undergraduates are taught (& that is the point of these summaries) &; 2) I haven't had a chance to update it even though it is several years old (writing new summaries instead).

The last MakingMolecules #Chemistry #ChemEd #ChemSky of the year, but what a post, an org chemist introducing rates of reaction with collision theory! The pool analogy is shaky/orientation is important than direction/frequency not numbers). It's a vital topic but find a physical chemist for details.

After 2 months of aromatic chem, here is something a little different (but not that different) & a #Chemistry #ChemSky #ChemEd summary on conjugate or 1,4- or Michael additions. To sound like a stuck record, it is aimed at UG with only the general mechanism & brief notes on regioselectivity. Enjoy.

The last nucleophilic aromatic substitution #Chemistry #ChemEd #ChemSky summary is a summary of the previous summaries. It shows 4 mechanisms of nucleophilic aromatic substitution including classic substitution, aryne intermediates, ionic & radical substitution of diazonium salts. Hope it helps.

The second #ChemEd #Chemistry #ChemSky summary on nucleophilic aromatic substitution. This time it covers the formation & use of diazonium salts. The substitution mechanism is either ionic or radical depending on the nucleophile. Good(ish) with paracyclophane (honest)! Hope this is useful. Enjoy

After 3 #Chemistry #ChemSky #ChemEd summaries on electrophilic aromatic substitution, we move to the nucleophilic variant SNAr (surprise). Not as common (due to structural limitations), but equally useful. Next week, the same reaction but with diazonium salts. Hopefully no silly mistakes this time!

Anyone for a summary of a summary? After two weeks of #ChemEd #ChemSky #Chemistry summaries on electrophilic aromatic substitution here, by popular demand, is one chart that covers just the basics. Enjoy.

More electrophilic aromatic substitution. Last week was the general reaction, today covers (de)activation & directing effects. It is a #UG simplification so no discussion of inductive effect vs hyperconjugation etc (or the transannular effect). Enjoy #ChemEd #Chemistry #ChemSky

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Here's a #ChemEd #Chemistry #ChemSky summary of electrophilic aromatic substitution. As an ex-[2.2]paracyclophane chemist, this is a reaction dear to my heart. Here is just the basic mechanism aimed at UG (the mechanisms for electrophile activation are www.makingmolecules.com/blog/electro...). Enjoy

No MakingMolecules #ChemEd summary today as NZ_Molecules is in Singapore with the wonderful folk at Gerstel (& only being a tiny bit jealous of their kit). I feel a summary of sensory directed analysis coming at some point as it is simply fascinating (& a powerful technique to help at work).

No new #ChemEd #Chemistry #ChemSky summary today, just an attempt to summarise the alkene chemistry that has been covered in the last couple of infographics. It also acts as a spoiler for next week's look at anti-Markovnikov addition. Hopefully it still has some use.

A #ChemEd #Chemistry #ChemSky intro to the frontier molecular orbital view of electrophilic addition to alkenes. It is a companion to the last one (bsky.app/profile/maki...). It is an oversimplification but useful at #UG level (I hope). It shows the limitations of curly arrow mechanisms. Enjoy.

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The 1st in a series of #ChemEd #Chemistry #ChemSky summaries on the reactions of alkenes. I'm starting with nucleophilic alkenes & the common UG reactions of the addition of HX, Br2, epoxidation etc. It's a bit crowded but hopefully it is useful. More details & reactions over the coming weeks.

The 1st in a series of #ChemEd #Chemistry #ChemSky summaries on the reactions of alkenes. I'm starting with nucleophilic alkenes & the common UG reactions of the addition of HX, Br2, epoxidation etc. It's a bit crowded but hopefully it is useful. More details & reactions over the coming weeks.

A #ChemEd #Chemistry #ChemSky summary of acyl substitution. There is one mechanism repeated multiple times (with variations). It is addition & elimination. Acylation is possibly the most important reaction (along with proton transfer) for non-chemists taking chemistry. Hope this is useful. Enjoy.

More nucleophilic addition to aldehydes/ketones, this #ChemEd #Chemistry #ChemSky summary covers condensation & the formation/hydrolysis of acetals, imines & enamines. The mechanism is the same each time, but understanding why they deliver different products is important. Enjoy

This #ChemEd #Chemistry #ChemSky summary is an intro to nucleophilic addition to aldehydes/ketones. It's the 1st of many as I think carbonyl addition is far more useful than the traditional Sn1/Sn2 approach for teaching the basics (& more examples in biology). Hopefully it's useful. Enjoy.