Philipp Bayer

Philipp Bayer

@philippbayer.bsky.social

From plant breeding bioinformatics to marine eDNA to rare disease drug development! 'It is required that one man should goof gloriously for the people.'

1K followers1.2K following1.2K posts

Just remembered I wrote exactly one (1) German Wikipedia article about an obscure Japanese movie 20 (!!!) years ago - just had a look, it's still there, still largely unchanged, mostly bot-driven changes over the years. I think the movie is too obscure for the editors to find and delete it. Yay

Their private key was the number 4???? ????????

Molly White@molly.wiki

“The compromised eMudhra keys were defective at a level that’s challenging the imagination of many of the engineers studying the incident. ... ‘That is extremely in the ‘this should not be possible’ category,’ Valdorda said.”

Philipp Bayer reposted

Many Japanese Edo period dramas are filmed in outdoors stylised villages. You can often see recent invasive plants - I see you, very obvious Tall Goldenrod, ornamental plant from North America, introduced about 200 years after the events surrounding you

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Easy to make fun of, but the exact same mindset that for decades has been saying "we dont need to change our way of life, technological developments will fix climate change"

Philipp Bayer reposted

Have you ever looked at a gene in IGV or a genome browser and wondered “What are all those (ATAC-seq/H3K27ac/CTCF ChIP-seq/…) peaks doing?” 🤔 I’m thrilled to share that we developed a new technology called Swap-seq to answer that exact question. Swap-seq: www.biorxiv.org/content/10.6...

biorxiv.orgSystematic mapping of enhancers, silencers, and topological elements with prime editing deletion screensNoncoding regulatory elements in the human genome can control gene expression through distinct mechanisms, including acting as enhancers, silencers, or topological elements. However, we lack tools to ...

Philipp Bayer reposted

Philipp Bayer reposted

Australia's research funder is trialling a partial lottery for their new high risk, high reward grant scheme. Details are yet to come, but it'll be interesting to see how this changes the national funding landscape. 🧪 #ecology #research

ARC Tracker@arc-tracker.bsky.social

ARC has given some details of how new Explore scheme will run ▶️ www.arc.gov.au/news-and-pub... ❗️There's a lottery❗️ Peer review yields 3 categories: highly competitive, competitive, uncompetitive. After funding highly competitive apps, competitive ones enter a lottery for remaining $.

Was wondering how much UWA's executive layer had grown in the last 10 years and had an LLM try to piece together the numbers - from 4 pro-chancellors to 9 PVCs in 10 years. Sporting! At the same time, rankings went up, so UWA will be Nr. 1 uni in the world at about 18 PVCs....

What if mathematics is pretty because the mathematicians only look for pretty proofs. What if the upcoming swarms of LLMs find all the ugly theorems and ugly proofs. What if mathematics is just really ugly its just nobody ever looked

I was wondering whether I looked at my old papers through rose-tinted glasses, so I gave one of them to Opus with instructions to critically assess. More brutal than reviewer #3 on the methodological shortcomings. May need to lie down

What if the accelerationists were right after all

👁️🍄🪸@bloomfilters.plus

the mathematics award winning fields medalist and known himedanshi yu deng just said that if ai puts all mathematicians out of a job he's gonna go home and write yuri novels. girl please do it anyway i need to see what yuri a fields medalist mathematician can do omfg

Philipp Bayer reposted

For anyone not following the drama, there's been apparently a big development in ai math, along with some accusations of very bad behavior by OpenAI. But we don't have details yet. If I understand it, Buckmaster and Levent Alpoge made a big discovery on Navier-Stokes. Events go something like this:

Michael Barany@mbarany.com

copying here so it's in-thread too bsky.app/profile/mbar...

Philipp Bayer reposted

Last year, I publicly complained multiple times (see e.g. elevanth.org/blog/2025/07...) that the open access movement had been captured by publishers, and we are now worse off than before open access. Well people got mad at me for saying it. But I think things are still getting worse.

Eric Schares@eschares.bsky.social

🚨Update: Our analysis of global APC expenditure has now been expanded to cover more publishers (7 -> 14) and more years (2019-2025). We estimate $15B in APCs paid over seven years, $3.7B in 2025 alone. Elsevier crosses the $1B threshold by itself in 2025. arxiv.org/abs/2608.16322 #ScholComm

Today I learned that the many ensembl transcripts per human gene aren't really linked to the isoforms on Uniprot - even if you translate the transcripts chances are, most won't fit a Uniprot isoform. How strange!

Outside ot the US, postdocs are regular staff. It's always interesting to see Americans justify their unusual ways to themselves

Inside Higher Ed @insidehighered.com

Opinion | Postdocs Aren’t Burger Flippers: Why Unionization Is a Bad Idea Unionization disrupts the bespoke mentor-mentee relationships that are central to the advancement of science. By Evan D. Morris: https://bit.ly/3Sus7fa #EDUSky #AcademicSky #HigherEd

Philipp Bayer reposted

This was a difficult blog post to write, but an important one. With the impending reduction in Core Team capacity, we had to make tough decisions about what work we put down. [1/4]

The Carpentries@carpentries.carpentries.org

Our Director of Curriculum @tobyhodges.carpentries.org has provided an outlook for The Carpentries curriculum program. He shares details about the planned renewal of our core curricula and the adjustments to other elements of the program necessary. Full announcement: carpentries.org/blog/2026/08...

Optimist: The cup is half full. Pessimist: The cup is half empty. Bioinformitician: you thought the cup had content, but that is based on a long-disappeared postdoc's Perl script's outputs, which by the way you can't replicate using new data, and by this point you doubt whether there ever was a cup

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Philipp Bayer reposted

Now that LLMs can write decent-ish, average-ish papers and journals are getting flooded with submissions, can we finally move beyond judging researchers by research output? No? Ah, thought so

Philipp Bayer reposted

If you're a biologist, especially one in a field that has a history of eugenics and racism (which absolutely includes my own field of evolutionary biology) and you choose to remain "neutral" as race science once again crawls out from under its rock, you are not in fact neutral.

The newest Positron finally has in-line figures in Quarto documents!!!! No more blind describing of figures that render somewhere else Seems simple to display some figures but knowing computers, probably took a ridiculous amount of work