Jeffrey Perkel (he/him)

Jeffrey Perkel (he/him)

@jperkel.bsky.social

Technology Editor at Nature magazine (@nature.com) #rstats #scicomm. Love is love. 💕

6K followers1.3K following587 posts

Jeffrey Perkel (he/him) reposted

Peak application of dendrochronology. 10/10, no notes.

Markus Eichhorn@markuseichhorn.bsky.social

Scandal in Nottingham as Ye Olde Trip doesn't even make it into the top ten oldest pubs in England. Even worse is that it's beaten by a pub in Southwell. The shame.

This artwork is, in part, what elevated Voet & Voet's Biochemistry textbook back when I was a grad student! (eg: www.wiley.com/en-us/shop/g...)

wiley.comBiochemistry, 4th EditionThe &ldquo;Gold Standard&rdquo; in Biochemistry text books. <b>Biochemistry 4e</b>, is a modern classic that has been thoroughly revised. Don and Judy Voet explain biochemical concepts while offering ...
RCSB Protein Data Bank@rcsbpdb.bsky.social

Irving Geis, born Oct 18, 1908, was a gifted artist who helped illuminate structural biology with his iconic images of DNA, hemoglobin, and other important macromolecules Explore his digital archive, created with permission from HHMI, at PDB-101

Jeffrey Perkel (he/him) reposted

This sounds like a good book countering simplistic & naive notions. “So long as we insist that cells are computers and genes are their code,” writes Ball, life might as well be “sprinkled with invisible magic”. But, reality “is far more interesting and wonderful” 1/3

Jeffrey Perkel (he/him) reposted

Yay, I'm so glad you're enjoying it! :) For anyone who wants to snag a copy: www.drcathicks.com#book

drcathicks.comDr. Cat HicksLeading the science of software success
Gergely Orosz@gergely.pragmaticengineer.com

A very very interesting and recent book by Dr Cat Hicks ( @grimalkina.bsky.social ): Pyschology of Software Teams She makes a good case on how most companies/teams don’t understand how devs operate and think of devs as “brains in jars.” And now we have AI suddenly enter the room…

Jeffrey Perkel (he/him) reposted

Thank you so much @interspecies.agency for these incredibly kind words! It is a labour of love, and I think about to get even better thanks to our new reporter James Dinneen. (Here's the sign-up page should anyone wish to take Matthew's excellent advice 😉 www.nature.com/briefing/ant...)

nature.comSign up for Nature BriefingAn essential round-up of science news, opinion and analysis, free in your inbox every weekday.
Matthew Ponsford@interspecies.agency

It is rare to find anything in the world of science writing that is so lovingly conceived and executed every week as @floragraham.bsky.social's Anthropocene briefing for Nature. Not sure how best to share a newsletter but here's trying mailchi.mp/nature/anthr... Sign up!

Jeffrey Perkel (he/him) reposted

“I do not want Claude to start telling people my research results.” New @nature.com, how researchers are using offline #LLM to analyze their data and literature libraries -- and keep them private. By David Brzostowicki. 🧪 www.nature.com/articles/d41...

nature.comPrivate, offline and yours: how to search the literature with local AI systemsConcerns about privacy, reproducibility and cost are prompting scientists to use models on their computers rather than in the cloud.

Jeffrey Perkel (he/him) reposted

A scientist's LLM 'went rogue' and emailed potential collaborators on his behalf. The action advanced his project, but the ends don't justify the means. Here, the researcher explains how to apply guardrails to your #AI. New @nature.com 🧪https://www.nature.com/articles/d41586-026-02714-y

nature.comI told ChatGPT to ‘continue’ — it went too farAn ambiguous instruction caused the chatbot to send three e-mails from Ying Zhao’s connected account. The incident advanced Zhao’s project, but showed that chatbots need limits.

Jeffrey Perkel (he/him) reposted

A scientist's LLM 'went rogue' and emailed potential collaborators on his behalf. The action advanced his project, but the ends don't justify the means. Here, the researcher explains how to apply guardrails to your #AI. New @nature.com 🧪https://www.nature.com/articles/d41586-026-02714-y

nature.comI told ChatGPT to ‘continue’ — it went too farAn ambiguous instruction caused the chatbot to send three e-mails from Ying Zhao’s connected account. The incident advanced Zhao’s project, but showed that chatbots need limits.

“I do not want Claude to start telling people my research results.” New @nature.com, how researchers are using offline #LLM to analyze their data and literature libraries -- and keep them private. By David Brzostowicki. 🧪 www.nature.com/articles/d41...

nature.comPrivate, offline and yours: how to search the literature with local AI systemsConcerns about privacy, reproducibility and cost are prompting scientists to use models on their computers rather than in the cloud.

This kind of tool (see also Quarto, Jupyter Book, and Manubot) is so cool -- and nicely solves the problem of incorrect values in a manuscript! (cc @casey.greenelab.com )

Ricardo Henriques@henriqueslab.bsky.social

🚀 Rxiv-Maker is now peer-reviewed and open access! Write your manuscript in Markdown and get a typeset PDF or an editable Word file, with figures, citations and cross-references numbered for you. Led by Bruno Saraiva, with @guijacquemet.bsky.social's lab 🔬 doi.org/10.1242/jcs.265183

Jeffrey Perkel (he/him) reposted

Another year, another all-male slate of winners. :sigh:

Nature@nature.com

None of this year's science Nobel Prizes have gone to women. The number of these prizes to go to women remains at 27 out of more than 600. See how many you can name in our quiz: www.nature.com/immersive/d4...

“Rather than fight this tug of war that exists between what cells want to do and what we as engineers want to do, we kind of just cut the rope.” New @nature.com, how researchers are refining cell-free protein expression systems to advance synthetic bio & other apps. 🧪 www.nature.com/articles/d41...

nature.comCells, who needs them? Biochemists turn to proteins in a tubeScientists are using cell-free transcription and translation systems to synthesize proteins, design biology-based sensors and develop synthetic cells.

Jeffrey Perkel (he/him) reposted

"Co-Scientist combed thru 700+ papers and generated 108 possible strategies. It rejected all but one as unworkable. The last strategy turned the lab’s thinking on its head." New @nature.com, how #AI co-scientists are upending the way research is done. By Elie Dolgin 🧪 www.nature.com/articles/d41...

nature.comAI co-scientists are revolutionizing how research is doneArtificial-intelligence systems can generate hypotheses, design experiments and analyse data — but humans still need to decide what makes sense.

Jeffrey Perkel (he/him) reposted

Jeffrey Perkel (he/him) reposted

Shanah Tovah, New York! Wishing all Jewish New Yorkers celebrating a sweet, joyful and meaningful Rosh Hashanah. Here’s to a new year filled with health, happiness and blessings (and yes, even another Knicks championship).

Jeffrey Perkel (he/him) reposted