Ryan Senne (he/him) reposted
Ryan Senne (he/him)
Ryan Senne (he/him)
@ryguy.io
Computational Neuroscience Ph.D. Student @ Boston University. Labs of Dr. Brian DePasquale, Ben Scott, & Steve Ramirez. #JuliaLang stan.
216 followers483 following27 posts
Ryan Senne (he/him) reposted
This seems a big step forward enabling cortex-wide recordings in naturalistic setups! www.nature.com/articles/s41...
Ryan Senne (he/him) reposted
Ryan Senne (he/him) reposted
Ryan Senne (he/him) reposted
Re-post 🔁 is appreciated! #neurojobs: we’re looking for new team members to join us @cmc-unit.bsky.social! If you’d like to study decision-making in naturalistic & embodied contexts (integrating RL, RNNs & cross-species data analysis) in a cool & collaborative research environment 😎, check 👇
Link to ads: Postdoc position: nextcloud.tuebingen.mpg.de/index.php/s/... PhD position: nextcloud.tuebingen.mpg.de/index.php/s/... We’re also both at @bernsteinneuro.bsky.social and happy to chat!
Ryan Senne (he/him) reposted
Glia gang, this is for you! In this video by our #ElectronMicroscopy team, shows a pyramidal neuron (PyC) surrounded by 8 glia brain cells – 5 microglia (MG) and 3 oligodendrocyte progenitor cells (OPC). 🧠📈 http://microns-explorer.org
Ryan Senne (he/him) reposted
Replying to @shahabbakht.bsky.social
My initial take on this is that yes some of our previous questions are either solved or feel less relevant. But, scaling isn't producing human like intelligence. There are still fascinating questions. How do we learn and compute with so little sample data and energy? for example.
Ryan Senne (he/him) reposted
If you are an undergraduate student interested in computational and systems neuroscience research, this is your chance to attend #COSYNE27 !!! Apply here for our undergrad travel grant tinyurl.com/cos27ugtravel deadline is Oct 30 (and if you are not an undergraduate, please help to spread the word!)
Check out my latest work from the Ramirez lab with co-author @rsuthard.bsky.social! It’s got astrocytes—what more do you need!?
🚨 new work from the lab! "Hippocampal astrocytic sequences emerge during learning and memory recall" by @ryguy.io & @rsuthard.bsky.social thank you to the entire team for your camaraderie and for muscling through science together 🧠 -- we welcome all feedback! nature.com/articles/s41...
Ryan Senne (he/him) reposted
Nature research paper: Amygdala astrocyte primary cilium mechanisms contribute to stress behaviours go.nature.com/3UiC3bT
Ryan Senne (he/him) reposted
📣 NEW! I’ve just released the BIGGEST and perhaps most creative project I’ve ever worked on! “Searching for Birds” searchingforbirds.visualcinnamon.com 🐤 A project, an article, an exploration that dives into the data that connects humans with birds, by looking at how we search for birds.
Ryan Senne (he/him) reposted
Ryan Senne (he/him) reposted
I co-sign this great summary from @dereklowe.bsky.social . The goal is to destroy academic science, and these are the reasons. And all the “gold standard” and “needs reform” and “not high risk” stuff is transparent bullshit to hide the ball on what they are doing.
Thoughts on the various Trump administration proposals to revamp US science funding - and what they all have in common:
Ryan Senne (he/him) reposted
Ryan Senne (he/him) reposted
Hippocampal engrams configure prefrontal context representations to guide flexible decisions Impressive combo of methods to manipulate and record this process: www.biorxiv.org/content/10.6...
Ryan Senne (he/him) reposted
Ryan Senne (he/him) reposted
Today I learned that some of my nested quantile visualizations implemented for R and Python in github.com/betanalpha/m... have been implemented for Julia in the FlexiChains library, pysm.dev/FlexiChains..... Neat!
Ryan Senne (he/him) reposted
Ryan Senne (he/him) reposted
@aloctavodia.bsky.social has been porting Bayesian Workflow book avehtari.github.io/Bayesian-Wor... case studies to Python using CmdStanPy, numpyro, ArviZ, Bambi, and kulprit arviz-devs.github.io/bayesian-wor... He is working on porting the rest of the case studies, too
Ryan Senne (he/him) reposted
Ryan Senne (he/him) reposted
How can AI change theoretical neuroscience? Technologies separate us from the mechanics of computation. Are we liberated to focus on the big picture or abandoning the substrate of thought? Born from an ongoing experiment in my lab about balancing these technologies for research and training
Agentic coding makes it possible to specify a neuroscience model in hours instead of months, writes @briandepasquale.bsky.social. The field risks becoming prolific but shallow—generating models faster than we can generate insights. #neuroskyence www.thetransmitter.org/the-big-pict...
Ryan Senne (he/him) reposted
Interesting Transmitter article by Brian DePasquale on what will be the effect of the increasingly widespread use of LLMs to code up research ideas in neuroscience. Includes a somewhat sceptical commentary from me. 😉
Agentic coding makes it possible to specify a neuroscience model in hours instead of months, writes @briandepasquale.bsky.social. The field risks becoming prolific but shallow—generating models faster than we can generate insights. #neuroskyence www.thetransmitter.org/the-big-pict...
Check out the new work from the DePaq lab!
🚨 New preprint from the lab! 🚨 We introduce BiXformer, a bidirectional cross-attention transformer for disentangling inter-regional neural dynamics. Recordings from multiple regions superimpose feedforward & feedback signals 🔁, offset in time, making it difficult to tease these signals apart. 🧠 🔁
Ryan Senne (he/him) reposted
Ryan Senne (he/him) reposted
In Jan 2029 a trifecta should pass a large bill package that overturns somewhere between 20 and 50 Roberts Court decisions of the last three decades. We can roll back what they did to legalize political bribery, enable fraud, empower white collar criminals, destroy the govt, etc.
We need Congress to be able to pass resolutions that state that a particular decision, while not being overturned, used an interpretation that does not represent the will of Congress, so it shall not be considered as precedent.
Ryan Senne (he/him) reposted
Russell Vought’s OMB published a rule today attacking peer review, which came along with a Murdoch NY Post article favorable to the rule- and attacking peer review. Which all makes the timing of yesterday’s Murdoch WSJ article attacking peer review seem much more suspicious!
#MurdochJournal attacks peer review as, uh, woke "group think." If the academy is so left-wing, it's amazing how easy it for the Journal, Times, and Post to find right-wing profs to write op-eds. A Way to Challenge the Groupthink of Scholarly Journals www.wsj.com/opinion/a-wa...
Move over, GLM-HMM—there’s a new hidden Markov model in town. In our new preprint, we introduce the DDM-HMM: a model that jointly infers latent decision states from reaction times and choices. Using 24-hour behavioral data from rats, we found that evidence accumulation changes with time of day!
Diurnal rhythms of choice: a novel state-dependent drift diffusion model uncovers time-dependent changes in rat decision making https://www.biorxiv.org/content/10.64898/2026.05.25.727672v1
Lastly a huge thanks to all the authors especially my advisors @briandepasquale.bsky.social and the bluesky-less Ben Scott!
Move over, GLM-HMM—there’s a new hidden Markov model in town. In our new preprint, we introduce the DDM-HMM: a model that jointly infers latent decision states from reaction times and choices. Using 24-hour behavioral data from rats, we found that evidence accumulation changes with time of day!
Diurnal rhythms of choice: a novel state-dependent drift diffusion model uncovers time-dependent changes in rat decision making https://www.biorxiv.org/content/10.64898/2026.05.25.727672v1
Ryan Senne (he/him) reposted
And finally it was published! Massive thanks to my coauthors, the editor and reviewers, and the institutions that supported our research. journals.plos.org/plosone/arti...
What did the dove sing to Pope Gregory? A thread on phylogenetics and cultural evolution featuring our new preprint with Jan Hajic jr. and Klára Mühlova (www.biorxiv.org/content/10.1...) and previous contributions to the field.
Ryan Senne (he/him) reposted
Congratulations to #FlatironCCN director @eerosim.bsky.social on his election to the National Academy of Sciences! https://bit.ly/42AEUhl #science #neuroscience
Ryan Senne (he/him) reposted
Super excited to (finally!) show our work on identifying cell types! Now in press www.nature.com/articles/s41.... We show how to identify cell types from ephys recordings *without* optotagging. This opens the study of not just individual cell types, but the interacting neural circuit during behavior
Ryan Senne (he/him) reposted
Ryan Senne (he/him) reposted
Ryan Senne (he/him) reposted
Cosyne invited me to give a long tutorial (4 hours!) on methods to quantify differences high-d neural recordings across animals, brain regions, deep neural nets, etc. The recording is up on youtube. I hope it inspires more research on this fundamental topic! www.youtube.com/watch?v=n44x...
Ryan Senne (he/him) reposted
ArviZ 1.0 is out! We have refactored it to be more modular, flexible & lightweight. For an overview of the changes, check the migration guide. python.arviz.org/en/stable/us...
Ryan Senne (he/him) reposted
Checkout the notebook of this epic neuroscience dataset now on @dandiarchive.org and analyzed with pynapple!
Mission: record hippocampal place cells in zero gravity Crew: 3 rats with electrode arrays Vehicle: Space Shuttle Columbia Status: data now publicly available on DANDI, 28 years later The ratstronauts' mission is finally complete. 🐀🚀 h/t NASA about.dandiarchive.org/blog/2026/02...
Ryan Senne (he/him) reposted
So happy to announce my first published paper: Neuropixels reveal laminar microcircuit organization in monkey V1 in vivo www.pnas.org/doi/epdf/10....
Ryan Senne (he/him) reposted
As a proud Minnesotan, I second this
If my followers have been inspired by the fierce resistance the Twin Cities has put up to ICE, you should make it a point to take a trip here (April through October 😬), enjoy the wonderful things MN has to offer and support our small businesses. It continues to be a really tough time for them.
Ryan Senne (he/him) reposted
Ryan Senne (he/him) reposted
Walz: "What's happening in MN defies belief. News reports simply don't do justice to the level of chaos & disruption & trauma the federal govt is raining down... This long ago stopped being a matter of immigration enforcement. Instead, it's a campaign of organized brutality against the people of MN"