David Pollock reposted
David Pollock
David Pollock
@genomesevolve.bsky.social
Evolutionary and Mathematical Biology, sequence structure and function, genomes evolve, statistical theory and knowledge, empirical-theoretical interface, communication of evolutionary genetics, collaboratives, the mind-body problem, humanism
633 followers716 following453 posts
Just starting to read this paper on genome-wide convergence in fishes. Looks very worthwhile, and nice to see people using CSUBST. @agneeshbarua.bsky.social @msrivastava95.bsky.social Brice Beinsteiner Vincent Laudet @marcrr.bsky.social academic.oup.com/mbe/article/...
Asking editors to do a semblance of their job seems kind of extremist these days, but is it too late to save peer review?
Peer review would be much improved if editors read papers in full before sending out for review. They could then provide very basic high level feedback (e.g. reorganize the text for readability [in X way], provide p-values for every claim), saving reviewer time for more meaningful feedback.
David Pollock reposted
Replying to @jowolff.bsky.social
That toxic waste will then pollute the data sets used to train the next generation of AI models, leading to ‘model collapse’ as the AI tries and fails to model incoherent garbage, vomiting out yet more incoherent garbage in the process. Meanwhile repositories of scholarly information are destroyed.
David Pollock reposted
PhD position available at the University of Bern in Prof. Claudia Bank's lab. Application deadline: Jan 9, 2026. Ideal for candidates with a strong math and programming background. More info: https://banklab.github.io/positions/ #phd
David Pollock reposted
The first of its kind! ecomagazine.com/news/coastal... @azti.bsky.social @lanzen.bsky.social #eDNA #Biodiversity #MarineEcology
David Pollock reposted
It’s officially happening folks! The Microbial Population Biology Gordon Research Conference is back in Andover, New Hampshire starting June 27th of 2027! See you there!! @wcratcliff.bsky.social @ksbakes.bsky.social @surtlab.bsky.social #microsky #mevosky
Bioluminescence, phylogenetic analysis, ancestral reconstruction. This looks like a fun paper for my reading list. (credit to @evolutionsoup.bsky.social for bringing to my attention). royalsocietypublishing.org/rspb/article...
Good advice to beginning graduate students (and others, maybe everybody): "good writing is downstream of clear thinking and a strong understanding of the subject matter at hand." --Jamelle Bouie @jamellebouie.net
This is an interesting distraction driven by @jessicacalarco.com. The comment below misses the point that human-support (and art) wage rises are a lagging effect. It seems that what needs to happen is to accelerate the effect to counteract inequality. UBI perhaps? Decrease educational costs?
The Baumol effect leads to rising wages in jobs with low productivity growth (such as dog walking) and thus counteracts inequality across sectors, by the way.
David Pollock reposted
David Pollock reposted
"The digestive systems of carnivorous plants" This looks really cool. 👌 Work from Matthias Freund, Dorothea Graus, Rainer Hedrich & Kenji Fukushima et al. academic.oup.com/plphys/artic... #PlantScience
recent protein language models can extract embeddings from protein sequences reflecting high-order features, developed statistical tests to evaluate the adaptive convergence of such features. Interested to see how people will use this (I edited it, not an author). www.pnas.org/doi/10.1073/...
David Pollock reposted
Job Opening **ASSISTANT PROFESSOR MARINE ECOLOGY**, Department of Biological Sciences, University of Rhode Island. jobs.uri.edu/postings/15960
David Pollock reposted
My department at UT Austin is looking to hire an Assistant Professor in Evolutionary Biology, broadly defined. Feel free to reach out to me with any questions you may have. apply.interfolio.com/177547
David Pollock reposted
Happy to share Jialin's first publication. She did a great job exploring the transition to land in animals. Co-supervised by the great Jordi Paps and me and in collaboration with Davide Pisani and @phil-donoghue.bsky.social
Nature research paper: Convergent genome evolution shaped the emergence of terrestrial animals go.nature.com/4i0i61w
David Pollock reposted
David Pollock reposted
Open position at the Swiss Institute of Bioinformatics: We are looking for a Director of the Center of Pathogen Bioinformatics apply.refline.ch/499599/0346/... I am in the Center's steering board together with fantastic colleagues (Emma Hodcroft @firefoxx66.bsky.social, Richard Neher @neher.io, and
David Pollock reposted
📢 Open Call! The Max Perutz Labs invite applications for a Tenure-Track Professorship in Genome Biology. We are particularly interested in researchers investigating the molecular and biophysical mechanisms underlying genome function and regulation. More details ➡️ tinyurl.com/3t7vvdct
David Pollock reposted
Now accepting proposals for the Small Grants for Local and Regional Outreach, which provide up to $1000 USD for a variety of evolution education & outreach projects, workshops, and events. Submit your proposal by March 2, 2026! shorturl.at/I8HqO
David Pollock reposted
David Pollock reposted
Please register for BAPG at Stanford 12/6, especially if you want to give a talk or a poster. The deadline is Nov 16. bapg2025.github.io/bapg2025stan... And please reshare on bsky!
For population genetics and evolutionary biology folks in the Bay Area: the next BAPG will be hosted by Stanford CEHG and the Petrov lab at Stanford on 12/6. Registration is free but required. The deadline for talk submission is Nov. 16. Hope to see you soon! Pls RT! docs.google.com/forms/d/e/1F...
David Pollock reposted
One month left for early-career researchers to apply for a funded place at our Workshop 'Novelty, Co-option and Divergence During Gene Network Evolution' organised by James Hombría & Antónia Monteiro Deadline 5 Dec. biologists.com/workshops/ju... @isabelalmudi.bsky.social @jlopezrios.bsky.social
David Pollock reposted
#phahe #phagesky www.biorxiv.org/content/10.1...
David Pollock reposted
The end of an era: the Tree of Life Web Project is going dark after 3 decades. Anyone interested in communicating phylogeny online should read David's account of goals, history, and future. @bembidion.bsky.social subulatepalpomere.com/2025/11/02/t...
David Pollock reposted
David Pollock reposted
David Pollock reposted
Come join the Workshop on Phylogenomics in Cesky Krumlov, Czechia, from January 25 through February 7, 2026! Applications close November 15! #phylogenetics #evolution #genomics #ai evomics.org/apply-worksh...
David Pollock reposted
Come join us in beautiful Britanny, France in May 2026 for a workshop that I am organizing with @lucievirevolte.bsky.social and @psudmant.bsky.social on Rapid host adaptations to infections: sites.google.com/berkeley.edu...
David Pollock reposted
One of the most exciting works of my career, years in the making. We used high-throughput precision genome editing to test the fitness effects of thousands of natural variants. Our findings challenge the long-held assumption that common variants are inconsequential. www.biorxiv.org/content/10.1...
David Pollock reposted
I talked about why the replication/reproducibility crisis is, and has always been, rhetoric, rather than fact. Masking scientific progress in general in favor of a simplified crisis narrative has caused a lot of epistemic, ethical, and practical harms so far. We can and we must stop feeding it.
In twenty minutes, I'm giving a short talk that I titled: "Reproducibility crisis is not real, but it can hurt us" How's that for therapy?!
Blocking this site for producing what looks to be AI-generated nonsense, despite human-looking names that supposedly wrote and edited. Acetylcholinesterase *inhibitors* are the medicine, not acetylcholinesterase. The article, mixing words together, produces the exact opposite of true explanation.
Understanding MG medication options—guidance on treatments and their effects: https://bit.ly/3JEEoJ1 #MyastheniaGravis
"my AI says its trending toward significance" is enough reason to throw your AI out the window (let alone all the other reasons). It is painful to realize that the nonsense phrase "trending towards significance" was found often enough in the training data to make the AI parrot repeat it.
But mostly, I just think “my AI says its trending toward significance” belongs in the bad stats take hall of fame.
David Pollock reposted
Wanna to go to a virtual No Kings rally that focuses on healthcare (with a side of "vaccines are good, actually" and "eugenics is bad, actually")? Organized by disabled folks who can't go to an in-person event. Join Saturday at 2:30pm Pacific time, zoom link: us06web.zoom.us/j/8467741742...
David Pollock reposted
Also just thank you to everyone out there who is able to show up, and please be safe.
Please remember that many disabled people won’t be at the No Kings rallies tomorrow. A lot of the planned events are not accessible and/or disabled people are not safe or well enough to attend. Anything you can do to increase accessibility and inclusion will help the resistance!
David Pollock reposted
"it is a tunnel to nowhere on both sides"
Former Alaskan here who worked and traveled in that area. The utter stupidity of this isn't the tunnel itself (which is stupid) But that it is a tunnel to nowhere on both sides. The nearest connection to the road system is over 500 miles away in Fairbanks. And then what?